| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3344 |
|---|
| Symbol | |
|---|
| ID | 6161257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3721383 |
|---|
| End bp | 3722252 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641666119 |
|---|
| Product | alpha/beta hydrolase fold |
|---|
| Protein accession | YP_001792367 |
|---|
| Protein GI | 171060018 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGC AGCAGAGCCC CACCGCCGCC AACCCCGAAA TCGGCCAGCG CATCCGCACC
GGCGCGTTTC ACAGCAACGT GCACGACCTC GGCCGCGCTC ACCCTGGCCA GCCGCCGGTG
CTGCTGATCC ACGGTTCCGG GCCGGGTGTC AGCGCCTGGG CCAACTGGCG GCTGGTGATG
CCGGTGTTGG CCCAGGATCG GCGTGTGATC GCGCCCGACA TGGTCGGCTT CGGCTACAGC
GACCGGCCCG AAGGCATCAC CTATTCGATG GACACCTGGG TGCAGCAGGC CATCGACCTG
CTCGACGCGC TCGACCTGCC GCAGGTCGAT CTGATCGGCA ACAGCTTCGG CGGCGCGCTG
GCGCTGGCGC TGGCGATCCG CGCGCCGCAG CGAGTGCGCC GGCTGGTGCT GATGGGCTCG
GTCGGCGTGC CCTTCGAGCT GACGCCGGGG CTGGACGCCG CCTGGGGCTA CCAGCCCTCG
ATCGAGGCGA TGCGGCACCT GCTCGACACC TTTGCCTTCA GCCGCAAGCT GGTCACCGAC
GAGCTGGCGC AGCTGCGTTA CCAGGCCAGC ATCCGGCCCG GTTTCCAGGA ATCGTTTTCT
GCGATGTTCC CGGCGCCGCG CCAGCAGTGG GTCGACGCGA TGGCCAGCCC CGAGGCGGCG
ATCCGCGCGC TGGCGCACGA GACGCTGATC GTGCACGGCC GCGAGGATCA GGTGATCCCG
CTGCAGACCT CGCTGACGCT GTCGCAGTGG ATCCCGAACA GCCAGCTGCA CGTCTTCGGC
CATTGCGGCC ACTGGACGCA GATCGAACAC AGCGCGCGTT TTGCGCAGCT GGTGTCGAAC
TTCCTGGCCG AAGCCGACAC GCCGGCCTGA
|
|---|
| Protein sequence | MSQQQSPTAA NPEIGQRIRT GAFHSNVHDL GRAHPGQPPV LLIHGSGPGV SAWANWRLVM
PVLAQDRRVI APDMVGFGYS DRPEGITYSM DTWVQQAIDL LDALDLPQVD LIGNSFGGAL
ALALAIRAPQ RVRRLVLMGS VGVPFELTPG LDAAWGYQPS IEAMRHLLDT FAFSRKLVTD
ELAQLRYQAS IRPGFQESFS AMFPAPRQQW VDAMASPEAA IRALAHETLI VHGREDQVIP
LQTSLTLSQW IPNSQLHVFG HCGHWTQIEH SARFAQLVSN FLAEADTPA
|
|---|
| |