Gene Lcho_3330 details

Gene Information

• Locus tag: Lcho_3330
• ID: 6163717
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3707146
• End bp: 3708996
• Gene Length: 1851 bp
• Protein Length: 616 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 641666105
• Product: bifunctional glucokinase/RpiR family transcriptional regulator
• Protein accession: YP_001792353
• Protein GI: 171060004
• COG category: [G] Carbohydrate transport and metabolism; [K] Transcription
• COG ID: [COG0837] Glucokinase; [COG1737] Transcriptional regulators
• TIGRFAM ID: [TIGR00749] glucokinase, proteobacterial type

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 58
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGATCGCCC CTGAACTGAC ATCCGCCTAC CCCGACGGCC TGCGCCTGCT GGCCGATGTC 
GGCGCCTCGA ACGTGCGCTT TGCGCTCGAA TCGGCACCCG ATCGCTACTG GGCGAGCGAG 
GTTCTGCCCT GTTCTGCGCA TGAATCGCTC GAGGCCGCGG TGCGCACCTT CCTGCTCGCG 
CACGGCTCGC CGCCGGTTCG TCACGCGGCG TTTTCGCTGC CCAACCCGAT CGCCGGCGAC 
CAGGTGCAGC TGACCAACCA TCCGTGGGCG TTTTCGGTCG AGGCCATGCG GCGCGCGCTG 
GGCCTGCAGA CGCTGCTGGT GGTCAACGAC TACACCGCGC TGGCGATGGG GCTGACCCGG 
CTCGACGCCG GCGAGCGCAT CAAGGTGGGC GGCGGCGAGC CGGTCACCGG CGGCGTGCAG 
GGCGTGATCG GGCCGGGCAG CGGGCTGGGG GTGTCGGCCC TGGTGCTGGT GCAGGACCGT 
TACGTGGCGC TGTCGAGCGA GGGCGGCCAC GTCAGCTACC CGCCGCAGGA CGACGACGAG 
GAACAGGTCG TCGCTGCGGC CCGCCAGCGT TACGGCCATG CGTCAGGCGA GCGGCTGATC 
TCGGGGCCGG GGCTGGAGCT GATCCACGAG GTGATCGCCG CGCAGACCGG CCACCAGCCC 
GCCCGCCTCG CGGCGCCCGA GATCTCGGCG CGCGCCCTGG CCACGCCGCC GTGCCCGGTG 
GCGCAGCGCG CGCTGGCGGT GTTCTGCGCC ATGCTCGGCA CGGTGGCGGG CAACCTGGCG 
CTGACGCTGG GCAGCGTCGG CGGCCTCTAC ATCGGCGGGG GCATCGTGCC GCAGATCCTG 
CCGTTCTTCG AGGCCTCGGC GTTCCGCCGG CGCTTCGAGC AGAAGGGCCG TTTCAGCCAG 
TGGCTGACGC AGATCCCGAC CTGGGTGGTG GTGGCACCGC GTTCGGCGCT GCGCGGCACG 
TCGGCCTTTC TGGAGGATCA CCTCACCGCC GACCACGGCG CCGAGCCGCT GCTCGACGAC 
GTGCGCGCGG CGCTGCCGCG GCTGTCGACC TCCGAGCGCC TGGTGGCGGG CGACCTGCTG 
TCGGCGCCAC GCGCCTGGAT GAGCGACTCG ATCGCCCGCA TCGCCGATCG CTGCGGCGTC 
AGCACGCCCA CGGTGATGCG CTTCTGCCGC ACGATGGGGT TCAAGGGGCT GGCGGATTTC 
AAGCTGCGGC TCGGTGCCGG GCTGTCGGGC AGCACCAAGG TCGCGCACCG CCCGGTGCGC 
GCCGCCGATC CGACCGCCGA GCGCATGGCC ACCATCCTCA ACAACTCGAT CTCGGCGCTG 
ATCGAGCTGC GCGACCGGCT GCATCCGCAG GCCTTCGAGC AGGCCGTCAA GCTGCTGGCC 
AACGCGCGCC GGATCGAGGT CTACGGCGTC GGCGCCGCCG CGCTGGCGGC CGAGGAGGCG 
CAGCACAAGT TCGGCCGGCT GGGCCTGCAG GTGGTGGCGC GCACCGACTC GCAGCTGCAG 
AACGTGACGG CGGCGTTCCT CGGCCCCGAC GACGTGCTGC TGGTGCTGTC GAACTCGGGC 
GCGGTCGATC CGGTCAACGA GGCCGTGATG CGGGCGCGCC GCAGCGGCAC GCGGGTGATC 
GGGATGTGCC CGCAGCGCAG CGACCTGGCC CGGCTGTCCG ACGTGATCCT GCCGGTCGAT 
CACCCGGAGG ACCTGCAGGC GCTGGTGCCG ATGGTGTCGC GGCTGATGCA GACGGTGATC 
GTCGACGTGC TGGTCACCGA TCTGGCGCTG CAGCGGCGCG ACCACATCAA CGCCGCGCTG 
GTGCGCCAGG ATGATCAGCG CTACGCCTTC CTGAGCTCGC ACGGCAGCTG A 

 

Protein sequence

MIAPELTSAY PDGLRLLADV GASNVRFALE SAPDRYWASE VLPCSAHESL EAAVRTFLLA 
HGSPPVRHAA FSLPNPIAGD QVQLTNHPWA FSVEAMRRAL GLQTLLVVND YTALAMGLTR 
LDAGERIKVG GGEPVTGGVQ GVIGPGSGLG VSALVLVQDR YVALSSEGGH VSYPPQDDDE 
EQVVAAARQR YGHASGERLI SGPGLELIHE VIAAQTGHQP ARLAAPEISA RALATPPCPV 
AQRALAVFCA MLGTVAGNLA LTLGSVGGLY IGGGIVPQIL PFFEASAFRR RFEQKGRFSQ 
WLTQIPTWVV VAPRSALRGT SAFLEDHLTA DHGAEPLLDD VRAALPRLST SERLVAGDLL 
SAPRAWMSDS IARIADRCGV STPTVMRFCR TMGFKGLADF KLRLGAGLSG STKVAHRPVR 
AADPTAERMA TILNNSISAL IELRDRLHPQ AFEQAVKLLA NARRIEVYGV GAAALAAEEA 
QHKFGRLGLQ VVARTDSQLQ NVTAAFLGPD DVLLVLSNSG AVDPVNEAVM RARRSGTRVI 
GMCPQRSDLA RLSDVILPVD HPEDLQALVP MVSRLMQTVI VDVLVTDLAL QRRDHINAAL 
VRQDDQRYAF LSSHGS