| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3287 |
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| Symbol | |
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| ID | 6162426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3650494 |
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| End bp | 3651372 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641666062 |
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| Product | RpiR family transcriptional regulator |
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| Protein accession | YP_001792310 |
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| Protein GI | 171059961 |
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| COG category | [K] Transcription |
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| COG ID | [COG1737] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.210197 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGACA CCGCACCGCA GAACTTGACC GTCGAAGAGC TGCTCAAGCG CATCTCGCAG
GAGTACGAGA GCCTGAGCCG CCAGCTCAAG GTGATCGCCC GCCACGTCGA GCAGCACAGC
GACCACCTCG GCCTCGAAGG CATCCAGGAC GTTGCCGCGC AGTGCGGCGT GCAGCCCTCG
GCGGTGGTGC GTTTTGCCAA GCATTTCGGC TACTCCGGCT ACACCGAGCT GCAGCGGATC
TTCCGCGACG GCCTGTCGAA ACAGATCGCG CCCAACCGCA ACTACCAGTC GCGCATCCGC
GACGTGATCG AGTCGGGCGC GGGCGGGCTG TCGTCCGCCG AGATCGCGCA CGAGTTCCTC
GGCGGCAGCA TCACCGGCAT GCAGGAGCTG CGCAACAGCC TCGACGAGGC CGGTTTCAAG
CAGGCGGTCG ATCTGCTGGC GCAGACCGAG GTGATCTGGA TCGCCGGCTC GCGGCGCAGT
TTCCCGGTGG CGGTCTACCT CGACTACGCC TTCCAGCACA CCGACAAGCG CATCCTGCTG
GTCAACGCGC TCGGCAGCAT GCACGAAGGC CAGATGCGCT CGGTGCGACC GGGCGACGTG
ATGGTGGCGA TCTCGTTCGC GCCCTACGCC GAAGAGACCA TCACGGTGGC GCAGCAGGCG
GTACAGCGCG GGGCGAAGCT GATCGCGCTG ACCGACAGCC GCATGAGCCC GCTGGCGCGC
GAGGCCGACG TGTCGCTGAT CGTGCAGGAC AACTCGACCT TCGGCTTTCG CTCGCTCACC
AGCACGATGG GCCTGGCGCA GAGCCTGTTC ATCGCGCTGG CCTATCGGCT CGAGCTGCCG
TACCGGCCGA CCACCGCGGT GCGCACGCCG ACGGCCTGA
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| Protein sequence | MADTAPQNLT VEELLKRISQ EYESLSRQLK VIARHVEQHS DHLGLEGIQD VAAQCGVQPS
AVVRFAKHFG YSGYTELQRI FRDGLSKQIA PNRNYQSRIR DVIESGAGGL SSAEIAHEFL
GGSITGMQEL RNSLDEAGFK QAVDLLAQTE VIWIAGSRRS FPVAVYLDYA FQHTDKRILL
VNALGSMHEG QMRSVRPGDV MVAISFAPYA EETITVAQQA VQRGAKLIAL TDSRMSPLAR
EADVSLIVQD NSTFGFRSLT STMGLAQSLF IALAYRLELP YRPTTAVRTP TA
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