| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3286 |
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| Symbol | |
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| ID | 6162425 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3646440 |
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| End bp | 3650447 |
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| Gene Length | 4008 bp |
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| Protein Length | 1335 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641666061 |
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| Product | NACHT family-like NTPase |
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| Protein accession | YP_001792309 |
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| Protein GI | 171059960 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5635] Predicted NTPase (NACHT family) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.149878 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACTGGC ACCGCATCGT CGAACTGCAC GGCCCCACCA ACGGCTCGCA CGGCAGCGGC
TACCTGCTGG CGCCGGGGCT GGTGCTGACG GCGCGTCATG TCGCCGACGG CCTGGCGACG
ATGCGGCTGC GCCTGCTCGA AGCCGATGCC GACGGCCTGC CCGCCGGCGT CGGCGCCTGG
CAGTCGGCGC GGGTGGTCTG GTGCGGCAGC GGCGGCACGG ACCTGGCCCT GCTGGTGCCC
GCCGACGCCG CCGCGGTGTT CCGCACGCCA CCGGGTGGCG TGACGCTCGG GCGGCTCGAC
AGTCGAAGCC GCGCGCCGGT GCGGGTCGAC GCGCTCGGTT TTCCGCGCGC GGTGGCCACC
GCCACGCACA GCGACACGCT GCACGTCGAG GCCTGGGTCG ATCCGCTGAC CGCCGTGCGT
GCCGCCGTGC TGCAACTGCA GGTGACGAGC AGCCGCCCGG CCGACGCGCA AGGCTGGCGC
GGCATGTCGG GCGCGGCGGT GTTCGCGGCT GACCGGCTGG TGGGCGTGGT CGAAGCGGTG
CCGGCCGCGC TCGACGACCA CACGCTGCGC GCGGTGCCGG TGCACCCGCT GCTGGACGAC
GCCGAGGCGG TGCAATGGCT GCGCGCGGCC GGTGTCGCGA CGGCATTTCC GCAGGTCGAC
GCCGACTACG TGTCGCGCCT GCCCCGTGCG GGCGACTGGC GCGGCCTGCG CGAGACCTAC
ACCCGCGCCG TGGTGACGAC GCTGTGCCGC GTCGATCATG TCGGTTATGC CGTCGGCGGT
GCGGCCGCGC GGCGCATCCC GGCGCTGGCG GCGTATGCGG CGCAGCGCTT CGTGCCCGGC
GGGGCGGCCA GCGGCGACGC CGGCACCGAT GCGTTCATGG GCTCGGTCTT GACGCTGATC
TTCGGTGGGC TCGGCCAGCG CTTCGACCTG ACCGGGCGCG GCCTGCTCGG CGCCGAATGG
CTGGCGCAGC TGCCGCGGGG GGTGATCGTG GCCGAGGGCG GCGCGGGCAA GTCCACCGTG
CTGCGGCAGA TGCTGGCGCG CGCGTCCGGC GGCGCGGCGC TGCGGGTGCC GGTCTGGGTG
TCGCTGGCGC GGCTGCCGCA GGGCGGCGCG CTGAGCGTGC CGCGCTTCAT CACCCACCTG
GTCGCGCAGG CGCGCGACGA GCTGGGCCTG GTCGACGTGA CGCCCGCGTT CTTCGAGGCG
CTGGCACAGG AAGGCCAGCT CGTCATCGCG CTCGATGCGC TCGACGAATG CGGCTCGCTG
GCGCGCCGCC AGCAGGTGCG CGAGCTGATC GTCGAGCTGG CGCGGCAATG GCCGGGCTGC
ACGCTGTTCG TCAGCTCGCG CCCCGATGCC TTGCGCGACA CGCCGCTGCC GCTGCCCGAG
GCCGGCGCCG ACCCCGCCGC GCCGGACCGG TTCTATCCCT TCGGCCTGGC GCCGTTCGGG
CCCGACGACA TCGTGCCCTT CATGGCCAGC GCCTTCGACG ACGGCGCCCG GCTGGGCCAG
GACATCGCCC ATCGCACCGG CATCGAGGCG CTGATCCGCA CGCCGTTGAC GCTGACCCTG
GTCGGCCTGG TGGCGCGCAG CAACAAGGGC CTGCCGGCCA ACCGCACGCA GCTGTTCGCG
CGCTGCCTGG ACACCGTCTG CGAGACCTGG GAGGACACCA AGGGCGCCGC CGCCGACGGC
CTGCTGCCGG CGCAGCGCCT GGACGTGCTG CGCTGGCTCG GCTGGACGGC GCAGCGCGCC
GGTGGCGACG AACTGGATGC GCCGACCGCG CTCGCCGCCA TCGGGCAATC CGATGACGCA
CCCAACCTCG GCCGGGCCCG CACGGTGCTC GACGGCCTGG CGCGCCGCAA CCTGCTGCTG
CGCGCCGAGA CCGGGTCGGG CGCGTCGACC GCGGTGCGCA GCCTGCGCTT TGCCCACCCG
CAGTTTCGCG AATACCTGGC CGGTGCGCAC CTGGCCGAAC ACTTCATGCG CGATGCGGGC
GCGGTCGTGC CGGCGATGGC GCCGCACTGG CTCGACACCA CCTGGCTCGA CGTGCTGCGC
TTCGCGACCG CCACGCTGGA CGATCAGCCG AGCGGGCGCG ATGCCTTTTT GCGCGCCGTG
CTCGATGCGC CCGACCCCTG GCGCGACCTG CTGCACCGGC CCGAGTTCCT GGCCGTGCGG
CTGCTGGCTC GGTTGAGGCA GGCCGATGCG GCGATCGTTG CCGACGTGGT CGACACGCTG
GCGCACGTGG CGCTGCACGA ACCGGCCTTG CGCAACGACG CCGCGCAGGC GCTGCTCGAT
CTCGGTCATC ACCCGGCGGC CACGCCCGTG CTCGAACGGC TGGCGCGCGG CGAGGGCGTG
GCGCAGGTCT TCGAGGCGGT CGACGCCGAC GACGACCACC GCAACGAGCG CTGGCATTGG
CGGCTGGGCG CAGTCGCGGC CTTGGGCACC TTGCCGGATC GGCCGGTCAC GGCGCTGCGG
GCGCTCGAAG GCCTGCCCGC ATGCGGTGCG GCCGCGCAGC GCGAATGGTG GGCCACGCGC
CACCGCATCG GCGACACGGC GGCGGCGCTG GCCGGCCTCG AACAGCTGTT CGTGACGCGC
GACGATGATC GCGATGCGGC GGCGCTGGCG GCGACGCTGG ACGAACTGCA GGCCGGCGCC
CACTTCGACC GCTGGCTCGC GCAGGCGCTG GCGGCCGATC CGGCGCCGGG TGTGCGGCTG
GCGCAGCTGG GCCTCGAACG CGGCGTGCTG CCGGCGCAGT CGCCGCAGTG GCCGGCCTTG
TTCGAACGCG CCGCGGCGCT GCTGGCTCAG AACGATCCGG TCGACGACGG CGCGCCGCCC
TTCGTCAGCG AGGCGTGTTA CTTGGCGCTG GGTCAGCCCG CACTGCTGGC GCTGCCGGCC
GCGCAGGCGC TGCTGATCGA GGCGCTGCGT CATCGGTCGC TGGTCTGGTA CGTCGGCCCG
CACCTGCTCG ACGCCTGGCC GGCGCTGGCC GCACCGGCGG TCGCGGCGAT GGGCGATTAC
GTCGCCGACA CGTCCGACCC CGTGCTGCGT TCGCGTGCGA TGGGCTCGCG CCTGCGCATC
GTCATCGGCG CGCTGTGCCG GCTGGGCGAC GACATGCTGG CCGTGCCGGT GCTGCAGCGG
CTGGTCGAGC GGCTGCCGGT GTCGCCGTAC GACTGGCAGG ACGTCGCCCG CTCGCTGCTG
CAGCGCGGCG TGCACGAGCC GGTGCACACG CGGCTGCGGC AGCGGATCGT GCTGCCGGCG
GGTGTCGACG ACCGGCATCC GGACGATGCC AGCCAGCCGC GCGCCCAAAC CTGGTGGCTG
GCCTGGCAGC TCGATGCCGG TGCCACCCGC GCCTGGCTGG AGGCGATGTT CCGCAGCAGC
GCCGATCCGG TGGCCGACGC GCGGCACCTG ATGACGATCT GGCGCGTCAG CGGCATCGAA
CGCGTGGCGG GTGCGTGGTT CGCGCTGATC GCCGACGAGT CGAAGGCCGA TGCGGCTGCC
GGCCGCTCGC CCGATGGCAT GCCCGGGTGG CGGTTCCTGC ACACGCTGAC CACCTGCGAG
CACGACACGG CCTACTCCGA CCTCGCTCGC CATGTCCTGT ACGGCAGCGT GTTCGACGAC
CAGCCCGAAC CGCGCCCGCC GCCGCCCACG CTGGCGCAAC TGCAACGGCG TTTTGCACAG
GCGATCGAAC GCGACCACGC GCCGCGAGAG GGTCGTGACA CGCGCGATGT CGGTCGCCAT
CTCGACATCG ACGACGTGCG CGGGCTCGGC CAGATGCTGG GCCAGATCGC CAAGCTGGCC
GACGTGGCGA CGGCGCTGGC CTTGGCCGAC ACCTGGCTGC ATGACGCGCT GGCCGACGCG
GCCGAACCGC TAGAAGCGCG GGCCGATCGC CTGTTCGAGC GCCTGCAGGC GATCGGGCCG
ACCGGCTTGC GCGCGCCGCA GTGGCGCGAT CTCGTCGCCG ATCTGGCCCG CCGGCTCGAG
CCGGCGCAGC GCATCGACCT GATCGGCTGG CTGCGCGCCA ACGCCTGA
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| Protein sequence | MDWHRIVELH GPTNGSHGSG YLLAPGLVLT ARHVADGLAT MRLRLLEADA DGLPAGVGAW
QSARVVWCGS GGTDLALLVP ADAAAVFRTP PGGVTLGRLD SRSRAPVRVD ALGFPRAVAT
ATHSDTLHVE AWVDPLTAVR AAVLQLQVTS SRPADAQGWR GMSGAAVFAA DRLVGVVEAV
PAALDDHTLR AVPVHPLLDD AEAVQWLRAA GVATAFPQVD ADYVSRLPRA GDWRGLRETY
TRAVVTTLCR VDHVGYAVGG AAARRIPALA AYAAQRFVPG GAASGDAGTD AFMGSVLTLI
FGGLGQRFDL TGRGLLGAEW LAQLPRGVIV AEGGAGKSTV LRQMLARASG GAALRVPVWV
SLARLPQGGA LSVPRFITHL VAQARDELGL VDVTPAFFEA LAQEGQLVIA LDALDECGSL
ARRQQVRELI VELARQWPGC TLFVSSRPDA LRDTPLPLPE AGADPAAPDR FYPFGLAPFG
PDDIVPFMAS AFDDGARLGQ DIAHRTGIEA LIRTPLTLTL VGLVARSNKG LPANRTQLFA
RCLDTVCETW EDTKGAAADG LLPAQRLDVL RWLGWTAQRA GGDELDAPTA LAAIGQSDDA
PNLGRARTVL DGLARRNLLL RAETGSGAST AVRSLRFAHP QFREYLAGAH LAEHFMRDAG
AVVPAMAPHW LDTTWLDVLR FATATLDDQP SGRDAFLRAV LDAPDPWRDL LHRPEFLAVR
LLARLRQADA AIVADVVDTL AHVALHEPAL RNDAAQALLD LGHHPAATPV LERLARGEGV
AQVFEAVDAD DDHRNERWHW RLGAVAALGT LPDRPVTALR ALEGLPACGA AAQREWWATR
HRIGDTAAAL AGLEQLFVTR DDDRDAAALA ATLDELQAGA HFDRWLAQAL AADPAPGVRL
AQLGLERGVL PAQSPQWPAL FERAAALLAQ NDPVDDGAPP FVSEACYLAL GQPALLALPA
AQALLIEALR HRSLVWYVGP HLLDAWPALA APAVAAMGDY VADTSDPVLR SRAMGSRLRI
VIGALCRLGD DMLAVPVLQR LVERLPVSPY DWQDVARSLL QRGVHEPVHT RLRQRIVLPA
GVDDRHPDDA SQPRAQTWWL AWQLDAGATR AWLEAMFRSS ADPVADARHL MTIWRVSGIE
RVAGAWFALI ADESKADAAA GRSPDGMPGW RFLHTLTTCE HDTAYSDLAR HVLYGSVFDD
QPEPRPPPPT LAQLQRRFAQ AIERDHAPRE GRDTRDVGRH LDIDDVRGLG QMLGQIAKLA
DVATALALAD TWLHDALADA AEPLEARADR LFERLQAIGP TGLRAPQWRD LVADLARRLE
PAQRIDLIGW LRANA
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