| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3282 |
|---|
| Symbol | |
|---|
| ID | 6162586 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3642095 |
|---|
| End bp | 3643123 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641666057 |
|---|
| Product | oxidoreductase domain-containing protein |
|---|
| Protein accession | YP_001792305 |
|---|
| Protein GI | 171059956 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0673] Predicted dehydrogenases and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.00120981 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCG CCACCGCTCG TCTGCGTGTC GGCATCGCCG GCCTGGGCCG ACTGGGCAAG
CGCCACGCCG AGGCGCTGGC CTTCGGCACC CGCCATGTCG AACTGGTCGC TGCCTGCAGC
CCGGTCGAGG CCGAACGCGA TTTCGCGCGC GACTCGCTGG GCGTCGAGCG CCTCTACGCC
GACTTCGACG TCTTCATCGC CGATCCCGAC ATGGACGCTG TGGTGCTGGT CACGCCGACT
TCGTTGCACG CCGACCAGGC GATCGCCGCG TTGCGCGCAG GCAAGCACGT CTTCATCGAG
AAGCCGCTGG CGCTGAACAT GGCCGACTGC GAGCGCGTGC TGGCGGTGGC CGCCGAGCGT
CTCGATCAGG TGGCGATGGT GGGCTTCGTG CGGCGTTTCG ATCCGAGCTA TGTCAGCGCG
CAGGCCAGCG TGGCCGGCGG CGAGATCGGC CGGCCGTTCC TGGTGCGCTC GCAGACCTGC
GACCGCAACG ATCCGGACGG CTTCTTCGTC CGCTTCGCGC CCAGCTCGGG CGGCATCTTC
ATGGATTGCA GCGTGCACGA CATCGACCTG GCGCGCTGGC TGCTCGGCCG GCCGAAGGCG
CTGCGCGCCT TTGCCACCGG CACGATCGCG CTGCATCCGG GCCTGGCCGA CTGCGGCGAC
GTCGACAACG GCCTGGCGAT CGTTGAATTC GAGGGCGGTG CGCGGGCGGT GTTCTATGCC
TCACGCACGA TGGCGCATGG CCATGAAACC AGCACCGAGG TGATCGGCAC CGCCGGCAAG
CTGCTGGTGG GCGAACACGC CGCGCGCGAC CGCATCGTGC GCAGCGACGC CCACGGTGTG
CGCCACGCCG TGCTGGCGGA CTTTCATGAG CGCTTCCAGG CGGCCTTCGG CGCCGAGATG
GCGGCTTTCG TGGCGGCTTG CCGCGGCGAC GCGCCGTTGA CGCTGACCCT GACCGATGCG
GCCGAAGCCA CCCGAATCGG CCTGGCCATC ACGCGTTCGC TGCACAGCGG CATGCCCGAG
GTGGTGTGA
|
|---|
| Protein sequence | MSAATARLRV GIAGLGRLGK RHAEALAFGT RHVELVAACS PVEAERDFAR DSLGVERLYA
DFDVFIADPD MDAVVLVTPT SLHADQAIAA LRAGKHVFIE KPLALNMADC ERVLAVAAER
LDQVAMVGFV RRFDPSYVSA QASVAGGEIG RPFLVRSQTC DRNDPDGFFV RFAPSSGGIF
MDCSVHDIDL ARWLLGRPKA LRAFATGTIA LHPGLADCGD VDNGLAIVEF EGGARAVFYA
SRTMAHGHET STEVIGTAGK LLVGEHAARD RIVRSDAHGV RHAVLADFHE RFQAAFGAEM
AAFVAACRGD APLTLTLTDA AEATRIGLAI TRSLHSGMPE VV
|
|---|
| |