Gene Lcho_3272 details

Gene Information

• Locus tag: Lcho_3272
• ID: 6162907
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 3635531
• End bp: 3636229
• Gene Length: 699 bp
• Protein Length: 232 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 641666046
• Product: putative lipoprotein
• Protein accession: YP_001792295
• Protein GI: 171059946

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 18
• Fosmid unclonability p-value: 0.000256043
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGACGCCGC GTCTCGCCTG CTCCGTGCTG GTTGCCGTGC TGCTGGCCGG CTGCGAGGTC 
GTGCCCAGTG CCTCGTGGCA GATCGTCAAT CGCACCTTCG ACTCGGCGCC TTCTGCCACC 
CAGTCGCAGG CCCGGCCCGA CGCCCGTTTC GAGTACCTGC AACTCGACCG AGGCGCGAGT 
TCATTGCGCC TGGTGCTGGG CTATCGCAGC CTGCTGGCGC TGACGGCGCC AGGCCGGGTC 
GCGCCGATCC AGGAGCACTG GTACAGCGGT GACCGGGAAC TGCTGGTGCT GCGCGATGGC 
CGGCTCGAAC AGGCGCTGGG CATGGCGATC GAATGGCGTT CCAGCCAGGC GCCCGCCCAA 
CCCGACTGGG ACGCGCTGCT GGCCAGCCCC CGGCCGCTGC AGTGGCAGCG CCGTCGCGAC 
GAAATGCCGG GCTACCGCTA CGGACTGGTC GATGAGATCG AGTCGCGGCG TGTCGATCCG 
ACATCTGCCG CGATCCCGGC CGTGAGCGGG CTCGGCGAAG GCCTGGTCTG GGTGCAGGAA 
GACGTGCGCA GCCCGCTGGC CGACGGGCGC ATCTGGCAGC ACCGCCAGTG GTTTGCGCTG 
GCCCGCGAAG GCGAGCGCTG GCGGGTGCGC TGGAGCCGCC AGTGCCTGGC GCCCGACTGG 
TGCCTCGACC TGAAAACGCT GGACCGGGCG CCGTCCTGA 

 

Protein sequence

MTPRLACSVL VAVLLAGCEV VPSASWQIVN RTFDSAPSAT QSQARPDARF EYLQLDRGAS 
SLRLVLGYRS LLALTAPGRV APIQEHWYSG DRELLVLRDG RLEQALGMAI EWRSSQAPAQ 
PDWDALLASP RPLQWQRRRD EMPGYRYGLV DEIESRRVDP TSAAIPAVSG LGEGLVWVQE 
DVRSPLADGR IWQHRQWFAL AREGERWRVR WSRQCLAPDW CLDLKTLDRA PS