Gene Lcho_3251 details

Gene Information

• Locus tag: Lcho_3251
• ID: 6163577
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 3607902
• End bp: 3608612
• Gene Length: 711 bp
• Protein Length: 236 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 641666025
• Product: ABC transporter-related protein
• Protein accession: YP_001792274
• Protein GI: 171059925
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 40
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGACCCG AACTCGGCAT CCGCATCGAA GGCCTGCGCA AGCGCTACGG CGAGGGCGAC 
ACCGCGGTCG ATGCGCTCAA GGACGTCAAC ATGACGGTCG CGCCCGGCGA GGTGGTCGGG 
CTGATCGGCC CGTCCGGCTC GGGCAAGAGC ACCTTGCTCA AGTGCCTGGG GGCGGTGATC 
GAACCCACGG CGGGCCGCAT GATCCTGGGC GGCGAGGCCA TCTACGCCGA CGGCTGGCAG 
ACGCCCGACC TGCGCGCGCT GCGGCGCGAC CGCATCGGCT TCGTGTTCCA GGCGCCGTAC 
CTGATCCCGT TTCTCGATGT CACCGACAAC GTCGCGCTGC TGCCGATGCT GGCCGGCGTG 
CGCAACGGCG CGGCGCGCGA ACGTGCGGTC GAGCTGCTCG AGGCGCTCGA TGTCGGGCAT 
CGCGCCCGGG CCTGGCCGTC GCAGCTGTCG GGCGGCGAAC AGCAGCGGGT CTCGATCGCC 
CGCGCGCTGG CCAACAAGCC CCCCGTGATC CTGGCCGACG AGCCGACCGC GCCGCTCGAC 
AGCGAGCGCG CACTGGCCGT GGTGCGCATC CTCAACCAGA TGGCCGTGCA GCATCACACC 
GCCATCATCG TCGTCACCCA CGACGAGAAG ATCATCCCGA CCTTCAAGCG GATCTATCAC 
ATCCGCGACG GACGAACCTA CGAAGAGGCC GGACTCGGGC AGAGCCTGTA G 

 

Protein sequence

MRPELGIRIE GLRKRYGEGD TAVDALKDVN MTVAPGEVVG LIGPSGSGKS TLLKCLGAVI 
EPTAGRMILG GEAIYADGWQ TPDLRALRRD RIGFVFQAPY LIPFLDVTDN VALLPMLAGV 
RNGAARERAV ELLEALDVGH RARAWPSQLS GGEQQRVSIA RALANKPPVI LADEPTAPLD 
SERALAVVRI LNQMAVQHHT AIIVVTHDEK IIPTFKRIYH IRDGRTYEEA GLGQSL