Gene Lcho_3194 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3194 
Symbol 
ID6162446 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3535193 
End bp3536122 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content69% 
IMG OID641665968 
Productalpha/beta hydrolase fold 
Protein accessionYP_001792217 
Protein GI171059868 
COG category[R] General function prediction only 
COG ID[COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)  
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.0270844 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGGCC TGCATACCGC CTGGTTCGAA GGCTTCTCAC CCCAGCAGCA TGCAGTCAAC 
GGCGTGCAGC TGTTTGCCCG GGTCGGCGGA CGCCCGGCCC ACGACAGCAG CGCGCCGCCC
CTGCTGCTGC TGCACGGTTT TCCGCAAACG CATGCGATGT GGCACCGGGT CGCGCAGCAG
CTGGCGCCGC ACTTCCGCCT GGTGCTGCCC GATCTGCGCG GCTACGGCGA CTCCGACAAG
CCACCCGGCG ACACCGACCA CGGCAACTAC AGCAAGCGTG CGATGGCCGC CGACCTGGTG
CAGCTCATGA AGCAGCTCGG CCACCGGCGT TTCCTGGTCT GCGGCCATGA CCGCGGCGCA
CGCGTGGCGC ACCGCATGGC GCTCGACTTC CCGGAGTGCG TCGACCGCCT GTGCCTGATC
GACATCGTGC CCACGCTGAC GATGTACGAG CGCACCGACA TGGCCTTTGC CACCGCCTAC
TACCACTGGT TCCACCTGAT CCAGCCGGCG CCGCTGCCCG AACGCATGAT CGGCGGCAAC
GCCCGCTACT ACCTGCACGC CAAGCTCGGC GGCTGGGGCA CCGACGGGCT CGATCACGTC
GAGCCGCCGG CGCTGCTCGA CTACGAACGC TGCTTCTGCA CCGCCCAGGG CATCCACGCT
GCGTGTGAGG ATTACCGCGC CAGCGCCAGC ATCGACTTGC AGCATGATCG GCAGTCGCAC
CAGGCCGGTC ACAAGGTCGC TTGCCCGGTC CATGTGCTGT GGGGCGAGCG GGGCGTGATC
CACCGCCTGT TCGATCCGCT GGCCGACTGG GGCGCGGTCT GCGAAGGCCC GGTCACCGGC
GAATCGCTGC CAGCCGGCCA CTTCATCCCC GAAGAGCTTC CCGAAGCCAC GGCTCTGGCG
CTGCGCCGGT TCCTGTCGGC CGAGTGCTAG
 
Protein sequence
MSGLHTAWFE GFSPQQHAVN GVQLFARVGG RPAHDSSAPP LLLLHGFPQT HAMWHRVAQQ 
LAPHFRLVLP DLRGYGDSDK PPGDTDHGNY SKRAMAADLV QLMKQLGHRR FLVCGHDRGA
RVAHRMALDF PECVDRLCLI DIVPTLTMYE RTDMAFATAY YHWFHLIQPA PLPERMIGGN
ARYYLHAKLG GWGTDGLDHV EPPALLDYER CFCTAQGIHA ACEDYRASAS IDLQHDRQSH
QAGHKVACPV HVLWGERGVI HRLFDPLADW GAVCEGPVTG ESLPAGHFIP EELPEATALA
LRRFLSAEC