| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3176 |
|---|
| Symbol | |
|---|
| ID | 6161598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3510295 |
|---|
| End bp | 3511371 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641665951 |
|---|
| Product | tartrate dehydrogenase |
|---|
| Protein accession | YP_001792200 |
|---|
| Protein GI | 171059851 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR02089] tartrate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.000641803 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACCT ACTCGATCGC CACCATTCCC GGAGACGGCA TCGGCAAGGA AGTTGTTCCT
GCCGGCCAGC AGGTGCTGGA AGCGCTCGCC GCGTCGAGCA ACCGCTTCGG CTTCGCGTTC
GAGAACTTCG ACTGGGGCGG CGACTACTAC CGCGCGCACG GCGTGATGAT GCCGGCCGAC
GGCCTGGACG CGCTGCGTGG CAAGGACGCG ATCCTGTTCG GCTCGGCCGG TGATCCGGCC
ATCCCCGACC ACATCACGCT GTGGGGCCTG CGCCTGAAGA TCTGCCAGGG CTTCGACCAG
TACGCCAACG TGCGCCCGAC GCGCATCCTG CCCGGCATCG ACGGCCCGTT GAAGCGCTGC
AAGTCGGAAG ACCTGAACTG GGTCATCGTG CGCGAGAACT CCGAGGGCGA GTACTCCGGC
GTCGGTGGCC GCGTGCACCA GGGCCACCCG ATCGAAGCCG CCACCGACGT GACGATGATG
ACCCGCGTCG GCGTCGAACG CATCATGCGT TTCGCCTTCA AGCTGGCGCA GAGCCGGCCG
CGCAAGCTGC TCACGGTGGT CACCAAGAGC AACGCCCAGC GCCACGCGAT GGTGATGTGG
GACGAGATCG CGCTGCAGGT CTCCAAGGAG TTCCCGGACG TCACCTGGGA CAAGGAAATC
GTCGACGCCT GCACCGCCCG CATGGTCAAT CGCCCGGCCA CGCTGGACAC GCTGGTGGCC
ACCAACCTGC ACGCCGACAT CCTCAGCGAC CTGGCCGCCG CGCTGGCCGG CAGCCTGGGC
ATCGCGCCCA CCGGCAACAT CGACCCGGAG CACCGCTATC CGAGCATGTT CGAGCCCATC
CACGGCTCGG CTTTCGACAT CATGGGCAAG GGCCTGGCGA ACCCGGTTGG TACCTTCTGG
TCGGTCGTGA TGATGCTGGA GCACCTGGGC GAGCTGGATG CCGCCAAGCG CCTGATGCAG
GCCATCGAGA GCGTCACCGC CAACCCCGCG CTGCACACCG GCGACCTGGG TGGCAAGGCG
ACCACCGCCC AGGTCACGCA GGCGGTCTGC CAGCAACTGG CCGGCAACAC GCGCTGA
|
|---|
| Protein sequence | MKTYSIATIP GDGIGKEVVP AGQQVLEALA ASSNRFGFAF ENFDWGGDYY RAHGVMMPAD
GLDALRGKDA ILFGSAGDPA IPDHITLWGL RLKICQGFDQ YANVRPTRIL PGIDGPLKRC
KSEDLNWVIV RENSEGEYSG VGGRVHQGHP IEAATDVTMM TRVGVERIMR FAFKLAQSRP
RKLLTVVTKS NAQRHAMVMW DEIALQVSKE FPDVTWDKEI VDACTARMVN RPATLDTLVA
TNLHADILSD LAAALAGSLG IAPTGNIDPE HRYPSMFEPI HGSAFDIMGK GLANPVGTFW
SVVMMLEHLG ELDAAKRLMQ AIESVTANPA LHTGDLGGKA TTAQVTQAVC QQLAGNTR
|
|---|
| |