| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3162 |
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| Symbol | |
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| ID | 6161758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3490803 |
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| End bp | 3495164 |
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| Gene Length | 4362 bp |
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| Protein Length | 1453 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 641665937 |
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| Product | hypothetical protein |
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| Protein accession | YP_001792187 |
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| Protein GI | 171059838 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2911] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.124572 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGACA CCGACTCACC GATCCGCCCG CCCACGCCGG CCCGCCGCCA CCCGGCGCGC
TGGCTCGGCG CGGCACTGCT GCTGGCCGTG CTGACGCTGG CCGCGCTGAT CAGCCTGCCG
TTCAGCGCCA CCGGCACGCG CTGGCTGCTG GCGGGACTGC AGCACGGCAT CGGCCTGGAG
GTCCAGGCCA GCCGCGGCGC GCTGCTGGGC GGCGATTTTT CGGCGCAGCG GCTGCGTTAT
GCGCTGTCGC CGACGCAGAC GCTGCTGATC GAGCAGCCGG CCTGGCAGGG CCTGCGCTGG
CAGCGCCCGG CCGGCGGGCC GCCGCTGGGC CACCTCCACC TGCAGCGCCT GAGCGCCGCG
CGCATCGACC TGCAAGGCGC CTCCGCCGAC ACGCAGCCGC TGCGCCTGCC GACCGCGCTG
AGCCTGCCGA TGGCGATCGA CATCGAGGCC ATCGCCGTCG GCGAGCTGGT GCTCGACGCC
ATCCGCGAAC GGCCGGTGCA CGACCTGGCC GTGCAGCGCC TGAGCCTGGG CGCGGGCAGC
GCCGGCCGGC ATCGGCTCGA CGCCCTGAGC CTGCAATGGG ACCGCATCGC GCTGCAGGGC
CGGGCCGAGC TGGCGGCGCA ACCGCCGGTG CTGCAGGCGC AGGCCCAGCT GCAGCCGCGC
CCGGATGCCG TCGGCAGCGC AACGGCCGGC ACCGCGCCCG GCGTTCCGGC CGACTGGCGG
GTCACGCTGC AGGCGCAGGG CCCGCTCGCC GACCTGGCGC TGCAGGCCGG CCTGAGCGCG
CGCGGCCAGT CGCTGCAGGC GGATGCGCGG CTGCGGCTCG AAGAGGCGAT GCCGCTGTCG
CAGCTGCAGG CGCAGCTCGA GGCGCTCGAC CTCGCGCCGC TCGCCAGCGG CCTGCCGCAC
ACCGCGCTCA GCGGCGCGAT CGACCTGCAG CTCGATGCCC GCGGCACCGG CCCCGCCGCC
CAGCCGCTGT CGGCCCGGGC CTCGCTGCGC AACGACGCCG CAGGCGCGCT GGCGGCCGGC
CGCATCCCGC TGCAAGCGGT CGAGCTGACC GCACACGGCG ACCTGCGCGC ACCCGACCGG
GGCCGGGTCG ACACGCTGCA GCTCACGCTC GGTACCCGGC AGGAACCGGC CGGCAGCGTC
AGCGCCAGCG GCAGCTGGGC GCTGGTCGGA CAGGGCGCGG CCCGGCGCAT CGACATCGAC
CTCGAAGCCC GCGTCGCCGA CCTGCGCCCG CAGCGCCTGC ACCCGGCCAG CCCGGCGCTG
CACATCGGCG GCCCGCTGGC CTGGCAGCTG AGCCAGCCGC TGCCGGCGGC CGGCGCCGCT
GCCCCGGCCG CCGGTTTCGA GACCCGCCTG CGCACGCGCC TGACCGGCCG GCTGATCGGC
GCCAGCCTGC CGGCGGTGAC GCTGGCGCTC GATGCCAAGG CCGATCCGGG CCGGCTGCAG
GTCGACAACC TGCAGGCCGA CGCGGGTGGC GCCCGGCTGT CGGGCAAGGG CAGCGTGGTG
CGCCGCAACG GCAACCTGCT GCTCGACTGG TCGAGCAGCC TGCAGGCTTT CGACCCGGCG
CTGTGGTGGC CACGGCCGGC GCCGCGGTCC GAGCCCGGCA CGCTCGACCG GCTGCTGGCG
GCCGGGCCGC ACGAACTCAA CGGCCAGCTC GGCGCCCGGC TGCAGTGGCC CGCCAAGGCG
CCGCGCAGCA TCGACGGGCT GGCGCAGCTG CGCGGCCAGG CGCAGTTCGA CCTGCAACCG
AGCCGGCTGG CCGGCCTGGG CCTGAGCGGG CAATGGCAGC TCAACGCCAT CCCGAGCGCC
GCGTCGGCGC AGCCGCATGT CGACACCCGC CTGGCCTTGC AGCTCGGCCC GGGCACGGCG
GCGACCACGC TGTCGCTGCA AGGCGTGCTC GATCCGGTCG GCAGCCGCGA CCAGTGGCAG
CTGGCCTGGA ACAGCGCCGA CCTGGCCCAG CTGGCGCCCT GGCTGCGGCT GCTGCAGCCG
GACCAACCGC CCGAACTCGA CGGCCGCAGC GACGGCCAGG CGCAGTTCGA CGGCCGCTGG
CCGCACATGC GCAGCAACGG CCGCGTCAAC CTGCCGGCGC TGGGCTGGCG CGGCGCCGAC
CGCCGCCTCG CCGTGCAGGA CCTGAGCGGC AGCTGGCGCG TCGGCAGCGG CGCAGACGAT
CCGCTCGAGG TCGACGCCCG GCTCGAGCGC GCCGACCTCG GCGGCTGGCA GCTGCGCGGC
CTGACCGTGA AGACCCGCGG CAGCGCCGCC GCGCACCGAC TGCGGGCGGA GCTGGCCGAA
CTGGCCCCCG GCGGCACGGC GGCGACCGTG GCCACCGGCG CCACCAAGCC CGACGGCAAC
GGCAACGGCA GCCGCGCGAT GCCGCCGCTG GCCGGCCTGA TCGAAGCCGG CGGCGCCCTC
GAACACGACT TCGGGCGGTC GCTGGTGGGC TGGCGCGGCC GGATCGAGCA GTTCGAGCTG
CGCGAAAAAA CCCTCGCCAC CGCGGTCGGT GCGGCCGCCA GCACGCCGAG CGGCCCGGCC
GCGCCGAGCG GGTTCACCCG GCCGGTGCGG CTGGTGCTCG ACCCCACGAC GCTGAACCTG
ACGCACTCGC CCGCGACCAC CACCGTGACG CTGGGCGCCA CGCGGCTGCA CCTGAGCGAG
CTGCACCTGG CGCTGCAGCA GTTCGCCTGG CAGCAGGACC GCAGTGGCGA GCACAGCGCC
GACCGGCTGG CGCTGCAGGG CCGGCTCGAC GCCATCGACG TGGCGCCGCT GCTGCGGCGC
GCCCAGCCCG ATTTCGGCTG GGGCGGCGAC CTGCGCATCG GCGGCAGCAT CGACGTGCAG
GCCACGCCCG AGAACTTCAG GCTCGCCGCC AGCCTGCAGC GCGACAGCGG TGACCTGCAG
GTCACCGACC CCGACGACCC CAGGAACCCG CAGCGCCTGG GCCTGGTCGA CCTGCGGCTG
GGCCTGTCGG CGCATGACGG CAACTGGCGC CTGACGCAGA CCATCAGCGG CGGCAACCTC
GGCCGGCTCG AAGGCGAACA GGGCCTGACG GCGCCGCCCG CGGCGATGTG GCCGCCGGCC
AGCGCCGCGG TCGCCGGCAA GATCGACCTG CAGGTCGCGC AGCTCGGCAA CTGGGGCCGC
TGGCTGCCGG CGGGCTGGCG GCTGTCGGGC CAGCTCGGCA CCGAGGCGCG CATCGCCGGC
CAGCTCGGCG CGCCCGAGCT GAGCGGCGAG CTGGTCGGCC GCAACCTCGC GGTGCGCAAC
CTGCTGCAGG GCGTCGACTG GCACGACGCA CAGCTGCGCG TGCGCCTGGA CGGCAGCACC
GCGCGGGTCG AGACCGCCAG CGTGCGCGCC GGTGACGGCC AGCTCAGCGC CACCGGCGAG
ATCGCGCTCG GCGCCGCGCC ACGGCTCGAC CTGAACGTCA GCGCCGACCG TTTCGCGGTG
CTGCAGCGGG TCGACCGGCG GGTGGTCGCC AGCGGCAGCG CGCGGCTGCT GCTCGATGCC
ACGTCGACGA TGCTGACCGG CGAGGTGCGT GCCGACGAAG GCCGCATCGA CTTCAGCCAG
AGCGACGCGC CCAGCCTGGC CGACGACGTC GACGTGCAGC GCCCCGAAGA CGCGGCCGCG
CGCGAACGCG CCGCCGCGGC TGCGCGCAGC CAGCGCCGCA CCGTGCTCGA CCTGCGCGCC
GACCTCGGCC CGGCCTTCAC GCTCAAGGGC CGCGGCCTGG CCACCCGGCT GGCCGGCGAG
CTGCGCCTGA CCAGCCCGGC CAACAAGCTG GCGATCAACG GCGTGATCCG CGCCGAGGAC
GGCAACTACG CCGCCTACGG TCAGAAGCTG CAGGTCGACC GCGGCCTGAT CACCTTCATC
GGCGCGGCCG ACAACCCGCG CCTGGACATC GAGGCCACCC GCCCCGATCT CGAAGACGTG
CGGGTCGGCG TGATCGTCAC CGGCACCGCC CAGGCGCCGC GCGTGCGGCT GTTCAGCGAG
CCCGCCATGA GCGACACCGA CCGGCTGTCG TGGCTGCTGC TCGGGCGCGC CTCCGACGGC
CTGGGCCGCA CCGACCTGGC GCTGCTGCAG CGCGCCGCCT ACGCGCTGCT GGCCGGCGAG
AGCGACTCGC CATCGATCGT CGAGCGCATC GGGCTCGATC AGCTGTCGGT GCGCCAGAAC
GACACCGGCG ACACCCGCGA GACCGTCGTC TCGCTGGGCA AGCAGCTCAG CCGGCGCTGG
TACGTGGGCT ACGAACGCAG CCTCAACGCC GCCGCCGGCA CCTGGCAGCT GATCTACCGC
GCCGCCCAGC GCTTCACGCT GCGAGCCCAG TCGGGCACCG AAAACGCGCT CGACCTGATC
TGGACCTGGA AGTGGGACGA CAGCGGCACG CGGGTCGACT GA
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| Protein sequence | MSDTDSPIRP PTPARRHPAR WLGAALLLAV LTLAALISLP FSATGTRWLL AGLQHGIGLE
VQASRGALLG GDFSAQRLRY ALSPTQTLLI EQPAWQGLRW QRPAGGPPLG HLHLQRLSAA
RIDLQGASAD TQPLRLPTAL SLPMAIDIEA IAVGELVLDA IRERPVHDLA VQRLSLGAGS
AGRHRLDALS LQWDRIALQG RAELAAQPPV LQAQAQLQPR PDAVGSATAG TAPGVPADWR
VTLQAQGPLA DLALQAGLSA RGQSLQADAR LRLEEAMPLS QLQAQLEALD LAPLASGLPH
TALSGAIDLQ LDARGTGPAA QPLSARASLR NDAAGALAAG RIPLQAVELT AHGDLRAPDR
GRVDTLQLTL GTRQEPAGSV SASGSWALVG QGAARRIDID LEARVADLRP QRLHPASPAL
HIGGPLAWQL SQPLPAAGAA APAAGFETRL RTRLTGRLIG ASLPAVTLAL DAKADPGRLQ
VDNLQADAGG ARLSGKGSVV RRNGNLLLDW SSSLQAFDPA LWWPRPAPRS EPGTLDRLLA
AGPHELNGQL GARLQWPAKA PRSIDGLAQL RGQAQFDLQP SRLAGLGLSG QWQLNAIPSA
ASAQPHVDTR LALQLGPGTA ATTLSLQGVL DPVGSRDQWQ LAWNSADLAQ LAPWLRLLQP
DQPPELDGRS DGQAQFDGRW PHMRSNGRVN LPALGWRGAD RRLAVQDLSG SWRVGSGADD
PLEVDARLER ADLGGWQLRG LTVKTRGSAA AHRLRAELAE LAPGGTAATV ATGATKPDGN
GNGSRAMPPL AGLIEAGGAL EHDFGRSLVG WRGRIEQFEL REKTLATAVG AAASTPSGPA
APSGFTRPVR LVLDPTTLNL THSPATTTVT LGATRLHLSE LHLALQQFAW QQDRSGEHSA
DRLALQGRLD AIDVAPLLRR AQPDFGWGGD LRIGGSIDVQ ATPENFRLAA SLQRDSGDLQ
VTDPDDPRNP QRLGLVDLRL GLSAHDGNWR LTQTISGGNL GRLEGEQGLT APPAAMWPPA
SAAVAGKIDL QVAQLGNWGR WLPAGWRLSG QLGTEARIAG QLGAPELSGE LVGRNLAVRN
LLQGVDWHDA QLRVRLDGST ARVETASVRA GDGQLSATGE IALGAAPRLD LNVSADRFAV
LQRVDRRVVA SGSARLLLDA TSTMLTGEVR ADEGRIDFSQ SDAPSLADDV DVQRPEDAAA
RERAAAAARS QRRTVLDLRA DLGPAFTLKG RGLATRLAGE LRLTSPANKL AINGVIRAED
GNYAAYGQKL QVDRGLITFI GAADNPRLDI EATRPDLEDV RVGVIVTGTA QAPRVRLFSE
PAMSDTDRLS WLLLGRASDG LGRTDLALLQ RAAYALLAGE SDSPSIVERI GLDQLSVRQN
DTGDTRETVV SLGKQLSRRW YVGYERSLNA AAGTWQLIYR AAQRFTLRAQ SGTENALDLI
WTWKWDDSGT RVD
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