Gene Lcho_3085 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3085 
Symbol 
ID6163473 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3415151 
End bp3416380 
Gene Length1230 bp 
Protein Length409 aa 
Translation table11 
GC content69% 
IMG OID641665860 
Productglycosyl transferase group 1 
Protein accessionYP_001792110 
Protein GI171059761 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0438] Glycosyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones59 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATCCTC CATCAGTCGC CTATCTGCTT TCGGCCTATC CCGACTTCCA CGAGACCTTT 
GTGGCCCGCG AGGTCGAGGC GATGCGGCAG TTGGGCATCA ACCTGCGCAT CTACTCGCTC
AAGCGACCCG ATCCCGGCGC CTACCTGTAC CCCGATCACG CCAGGATGGT GCGCTACCTG
CCGTTCCTGT TCGACGCCCA GGTGCTGCGC GGCGTGGCAC GCAGCGTGGT GCGCCACCCG
CTGCGCGTGG CGCGTGCGAT CGGCTGGCTG GCATCGACCT ACTGGCGGCG CCCGCTCGAG
CTGGCCAAGT CGATCGCGAT CCTGCCCAAG ACGCTCGCGA TCGCCGACGA ACTCGAAGGC
ACCGACATCG CGCTGCACGC GCACTGGGCC ACCATTCCGA CCTCGGCCGC GGTGGTGATC
CAGACCGTCA GCGGCCGGCC CTTCAGCATC ACCGCGCACG CCTGGGACAT CTACCTGCCC
AGCCGCGCCG AACTGCAGGA CAAGATCCGG CGCTGCTCGG GCCTGGTCAC CTGCACCGGC
TACAACGTCG GCTTCCTGCG CGATCTGGCC GGCCCCGGCA ACGATGACAA GGTCCACCTC
AACTACCACG GCATCGACCT CTCGAAGATC ACGCAGACCA CCCGCGTGCG CGAGTCCGGC
CAGCCGCTGA AGGTGGTGGC GGTGGGCCGG CTGGTCGAGC AGAAGGGGTT TGCCGATCTG
GTCGAGTCGG TCGGGCTGGC CAACAAGGGC GGCCGCCGGG TCGAGGTCAC GCTGATCGGC
GACGGCCCGC TCGAAGCCGA GCTCAAGCAG CTCGCGGCCA AACACGGCGT GGCCGATCGC
ATCGTGTTTG CCGGCCGCGT CGGCCATGCG CAGACCATCG CGACGATGTG CGCCGCCGAC
CTGCTGATGG CGCCCAGCGT GATCGCCAGG AACGGCGACC GCGACGGCAT CCCCAACGTC
GTGCTCGAGG CGATGGCCTG CGGCCTGCCG ATCATCGGCA CCTCGGTCTC GGGCATCCCC
GAGGTGGTGC GCACCGGCGC CACCGGCGTG CTGGTGCCCC CGGGTGACGC GCCCGCGCTG
GCCCAGGCGC TGGCCACGCT GCACGACGAC CCGGCGCATG CACGCGAATG CGGCCGCCGG
TCGCGCCAGT TCATCGAAGA GAACTTCATG GCCGAGAAGA ACGTCTGCGA TCTGGCCGGC
CACCTCGGGC GCTTCCACAA CTACCGATGA
 
Protein sequence
MHPPSVAYLL SAYPDFHETF VAREVEAMRQ LGINLRIYSL KRPDPGAYLY PDHARMVRYL 
PFLFDAQVLR GVARSVVRHP LRVARAIGWL ASTYWRRPLE LAKSIAILPK TLAIADELEG
TDIALHAHWA TIPTSAAVVI QTVSGRPFSI TAHAWDIYLP SRAELQDKIR RCSGLVTCTG
YNVGFLRDLA GPGNDDKVHL NYHGIDLSKI TQTTRVRESG QPLKVVAVGR LVEQKGFADL
VESVGLANKG GRRVEVTLIG DGPLEAELKQ LAAKHGVADR IVFAGRVGHA QTIATMCAAD
LLMAPSVIAR NGDRDGIPNV VLEAMACGLP IIGTSVSGIP EVVRTGATGV LVPPGDAPAL
AQALATLHDD PAHARECGRR SRQFIEENFM AEKNVCDLAG HLGRFHNYR