| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3068 |
|---|
| Symbol | |
|---|
| ID | 6162723 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3394959 |
|---|
| End bp | 3395990 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641665843 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_001792093 |
|---|
| Protein GI | 171059744 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGACGC TGCAACCCGA CCTCGTCGCG CTGCTCGAAG GCCAGTCGCG CCGCTGGCTG
GTGACCGGCA GCGCCGGTTT CATCGGCTCG CACCTGCTCG AGACCCTGCT GGCGCACGGC
CAGCAGGTCA CCAGCCTGGA CAACTTCGCC ACCGGGCACC GTCACAACCT GCAGGCGGTG
CGTGAATCGG TGGGCGAGGC CGCCTGGGCG CGCCACCATT TCATCGAAGG CGACATCGCC
GACCCGGACA CCTGCGTGGC CGCCTGCGAG GGCGCCCAGT TCGTGCTGCA CCAGGCCGCG
CTCGGTTCGG TGCCGCGTTC GCTGAAGGAT CCGCAGACCA CGCACCGCGC CAACGCGACC
GGCTTCCTGA ACATGCTGGT GGCTGCGCGT GATGTCGGCG CTCGCTTCGT CTACGCCGCC
TCCAGTTCGA CCTACGGCGA TTCGCCCACC TTGCCCAAGG TCGAGGACGT GATCGGCCGG
CCGTTGTCGC CGTACGCGGT CACCAAGTAC CTCAACGAGC TGTATGCCGA GGTGTTCGGG
CGCTGCTACG GCATGCAGAC GATCGGCTTG CGCTACTTCA ACGTCTTCGG CCCGCGCCAG
GATCCGAACG GCGCCTACGC CGCGGTGATC CCGCGCTGGA TCGCCGCGAT GCTGCGCGGC
GAGCCGTGCA CGATCAACGG CGATGGCGAG ACGTCGCGCG ATTTCTGCTA CATCGCCAAC
ACCGTGCAGG CCAATCTGCG CGCCGCCCTG GCCACCCAGG ACGCCGCCGT GAACCAGGTC
TACAACGTCG CCGTCGGCGA TCGCACCACG CTCAATCAGC TGCATGCGGC GCTGGCTGCC
GGCGTCGAGC GGGAGCGGCC GTCGCTCCAG GTGGCGCAGC CGGCGTACGC CGACTTCCGC
GGAGGCGACG TGCGCCATTC GCTGGCCGAC GTCAGCAAGG CGCGCACGTT GCTGGGCTAT
GAGCCCACGC ACGACGTTCA TGAAGGCCTG GCCGAGGCGA TCGCCTGGTA CGTGGCCAAC
GCGGCAGCCT GA
|
|---|
| Protein sequence | MLTLQPDLVA LLEGQSRRWL VTGSAGFIGS HLLETLLAHG QQVTSLDNFA TGHRHNLQAV
RESVGEAAWA RHHFIEGDIA DPDTCVAACE GAQFVLHQAA LGSVPRSLKD PQTTHRANAT
GFLNMLVAAR DVGARFVYAA SSSTYGDSPT LPKVEDVIGR PLSPYAVTKY LNELYAEVFG
RCYGMQTIGL RYFNVFGPRQ DPNGAYAAVI PRWIAAMLRG EPCTINGDGE TSRDFCYIAN
TVQANLRAAL ATQDAAVNQV YNVAVGDRTT LNQLHAALAA GVERERPSLQ VAQPAYADFR
GGDVRHSLAD VSKARTLLGY EPTHDVHEGL AEAIAWYVAN AAA
|
|---|
| |