Gene Lcho_3062 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3062 
Symbol 
ID6163116 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp3387348 
End bp3388085 
Gene Length738 bp 
Protein Length245 aa 
Translation table11 
GC content68% 
IMG OID641665837 
Producthelix-turn-helix domain-containing protein 
Protein accessionYP_001792087 
Protein GI171059738 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.119548 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATCCA CCGCCGACCT CATCAGCGTG CTCAAAGCCG AACTCAAGGC CGCCGGCATG 
ACCTACGCGC AGCTCGCCGC GGCGCTCGGC CTGGCCGAAT CGAGCGTCAA GCGCATGTTC 
GCGGCTGGCG ACATGCCGCT GTCGCGGATC GACGAGATCT GCCGCGTGCT GCGCACCGAT 
TTCGCCGAGC TGGCGCTGAA GGTGGCGGAC CGCCAGCCGC CACGCCGCGA GCTGACGCTG 
GAGCAGGAGC GCGCGGTGGT GGCCGACCGC AAGCTGCTGC TGGCCGCGAT CTGCTGCCTG 
AGCCAGTGGA CCTTCGATCA GGTGCTGACC AGCTACCGCT ACGACGAGGC CGAGCTGGTG 
CGCTATTTCG TGCAGCTCGA CCGGCTCGGC ATCATCGAGC TGAAGGCGCA CAACCGCTAC 
CGGCTGCAGG TGGCCAAGAC CTTCCGCTGG CGGCCGATGG GGCCGGTGAT GCAGTACTTC 
CGCGCCGAGG TCGTGCCCGA CTACTACCGC GGCGGCTTCG ATGGCGCCAA CGAGCTGCTG 
ATGCTGGTGC ACGGCGAGAT CGGCCACAGC CTGGCGGCGC TGTTCAACGA CCGCCTGGCC 
CGGCTGGCGC AGGACTTTGC CCAGCAGCAC CTGGCCGACC AGAAGCTGCC CGAGGCGCAG 
AAGCGGCCCT ACACGCTGGT GATCGGCATG CGCTCGTGGC TGTTCGGCGC GTTCAGGGAG 
CTCAAGCGCG AGGCTTGA
 
Protein sequence
MSSTADLISV LKAELKAAGM TYAQLAAALG LAESSVKRMF AAGDMPLSRI DEICRVLRTD 
FAELALKVAD RQPPRRELTL EQERAVVADR KLLLAAICCL SQWTFDQVLT SYRYDEAELV 
RYFVQLDRLG IIELKAHNRY RLQVAKTFRW RPMGPVMQYF RAEVVPDYYR GGFDGANELL 
MLVHGEIGHS LAALFNDRLA RLAQDFAQQH LADQKLPEAQ KRPYTLVIGM RSWLFGAFRE 
LKREA