Gene Lcho_3043 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3043 
Symbol 
ID6161570 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp3360526 
End bp3361215 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content68% 
IMG OID641665818 
ProductRhs element Vgr protein 
Protein accessionYP_001792068 
Protein GI171059719 
COG category[S] Function unknown 
COG ID[COG3501] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.00000160638 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCACCGCG ACCCCGTCTT CAGCCCACCC CCCGCCTGGA CCCACGGCGG CTTCCTGGCG 
CGGGTGGTTT CGCTCGACGA CCCCGAGCGG CGCAACCGCG TGCAGGTGCG CCTGCTCGCC 
TTCGACGCCG TGGCGCAGCA GGACGCGCCG CTGTGGGCGC GCGTGGTGGC GCCGTTCGCC 
GGTGACGACC GCGGCGTGTT TTTCCTGCCC GATGTCGACG ACGAGGTGCT GGTGGTGTTC 
GTGCAGGGCG ATGCGCGTTA CCCGCTGATC GTCGGCGGCC TGTGGAACGG CGGGGCGCAG 
TCGCCGGCCG ACATCGAGTC GGGCGGTCAG AACCGCTACA AGCGCATCAA GTCGAAAAAC 
GGCATCGTCA TCACGCTCGA CGACCAGAGC GGCCAGGAGA CGCTCCAGCT CGAAACGCCG 
GGTGGCCAGA AGCTGACGCT GAAAGACGGC CCCGGCACGG TGACGATCGA GGACAGCAAC 
GGCAACAGCA TCAAGCTCGA AGCGGCGGGC ATCACCGTGC AGGCCAGCGC CAAGGTCAAG 
GTGCAGGCGG CGCAGGTGGA GGTGACGGCC GGCATGGTCA AGGTCGACAC CGCGATGGCC 
ACCTTCACCG GCATGGTCAA GTGCGAGGTG CTGCAGGCCA CCTCGGTGAT CTCCACCAGC 
TACACACCGG GAGCGGGCAA TGTCTGGTGA
 
Protein sequence
MHRDPVFSPP PAWTHGGFLA RVVSLDDPER RNRVQVRLLA FDAVAQQDAP LWARVVAPFA 
GDDRGVFFLP DVDDEVLVVF VQGDARYPLI VGGLWNGGAQ SPADIESGGQ NRYKRIKSKN 
GIVITLDDQS GQETLQLETP GGQKLTLKDG PGTVTIEDSN GNSIKLEAAG ITVQASAKVK 
VQAAQVEVTA GMVKVDTAMA TFTGMVKCEV LQATSVISTS YTPGAGNVW