| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3028 |
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| Symbol | |
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| ID | 6162465 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3346780 |
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| End bp | 3348183 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641665803 |
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| Product | amidase |
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| Protein accession | YP_001792053 |
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| Protein GI | 171059704 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
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| TIGRFAM ID | [TIGR02715] amidohydrolase, AtzE family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGCGC TCTGGCAATC GGACGCGGCC GGCATCGCCG CCGGCGTGCG CGATGGCTCG
ACCTCGGCGC GAGCCGGCGT CGAACAATGC CTGGCGCGCA TCGCAGCCAC CGAGCCGCAG
GTCAACGCCT TCACCTCGGT GCTGGCGGAT CGGGCGCTGC GCCGCGCCGG CCAGATCGAC
AAGCACACGC GCCGCAGCGA GCTGTCGCTG GCGGGCGTGC CGTTCGCGGT CAAGAACCTG
TTCGACGTTG CCGGCCTGCC GACGCTGGCG GGCTCCAAGA TCGAGCGCGA CACGCTGCCG
GCGGCCCGCG ACGCGCTGCT GGTGCGCCGG CTCGAAGCGG CCGGCGCAAT CCTGGTCGGC
GCGCTCAACA TGGACGAGTA CGCCTACGGC TTCACCACTG AAAACACCCA TTACGGCACC
ACCCGCAACC CGCATGACCT GACGCGCATC TCGGGCGGCT CGTCGGGCGG CTGCGGCGCG
GCGATCGCGG CCGGCCAGGT GCCGATCACG CTCGGCTCGG ACACCAACGG CTCGATCCGT
GTGCCCGCGT CGCTGTGCGG CACCTTCGGC CTGAAACCCA CCTTCGGCCG GCTGCCGCGC
ACCGGCAGCT ACCCGTTCGT GGCCAGCCTC GATCACCTCG GGCCGTTTGC CCGCACGGTG
GCCGATCTGG CGCTGACGTA TGACGCGATG CAAGGCCCGT CGCACGACGA TCCCGGTTGC
GCCCGGCGGG CCCCCGAACG TGTGACCGGC GAGCTCGGGC TCGGCGCCGA AGGTCTGCGC
ATCGGCGTGC TGGGCGGCTG GTTCCGCAAC ATGGCGATGC CCGAGGCGCT GGCTGCCGTC
GACGCGCTGG CGCAGGCGCT CGGCACGACG CGGCTGATCG AATGGCCCGA GGTCGAGCGG
GCCCGCGCGG CGGCCTTCCT GATCAGCAAC TCCGAAGGCG CGACGCTGCA CCTCAACGAC
CTGCGCCGGC GCGCGCAGGA TTTCGAGCCG TTGTCACGCG ATCGTTTCCT GGCCGGCGCC
TTGTTGCCCG CCGCCTGGGT GCAGCAGGCG CAGCGTGTGC GGCACTGGTT TGCCCGCCGG
GTGGCGCGTT CGTTCGAGAC TGTCGACGTC GTGCTCGCGC CGGCCACGCC TTGCGTCGCG
CCGGTGATCG GCACCGAATG GCTCGAGATC GACGGCAAGC GCCTGCCCGC GCGCCCCAGC
CTGGGCCTGC TGACGCAGCC GGTGTCGTGC ATCGGCCTGC CGGTGGTGAC GGTGCCGGTG
TGGGGCATGA ACCCGACGTT GCCGCACCTG CCGATCGGCG TGCAGGTGAT CGCCGCGCCC
TGGCGCGAAG ACCTGGCGCT GCGGGTGGCC GCCCACCTCG AGGCGCGCGG CCTGTGCAGC
GCACCGATCG CCAAGCTGAA CTGA
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| Protein sequence | MTALWQSDAA GIAAGVRDGS TSARAGVEQC LARIAATEPQ VNAFTSVLAD RALRRAGQID
KHTRRSELSL AGVPFAVKNL FDVAGLPTLA GSKIERDTLP AARDALLVRR LEAAGAILVG
ALNMDEYAYG FTTENTHYGT TRNPHDLTRI SGGSSGGCGA AIAAGQVPIT LGSDTNGSIR
VPASLCGTFG LKPTFGRLPR TGSYPFVASL DHLGPFARTV ADLALTYDAM QGPSHDDPGC
ARRAPERVTG ELGLGAEGLR IGVLGGWFRN MAMPEALAAV DALAQALGTT RLIEWPEVER
ARAAAFLISN SEGATLHLND LRRRAQDFEP LSRDRFLAGA LLPAAWVQQA QRVRHWFARR
VARSFETVDV VLAPATPCVA PVIGTEWLEI DGKRLPARPS LGLLTQPVSC IGLPVVTVPV
WGMNPTLPHL PIGVQVIAAP WREDLALRVA AHLEARGLCS APIAKLN
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