| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3022 |
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| Symbol | |
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| ID | 6160844 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3340585 |
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| End bp | 3342264 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641665797 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001792047 |
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| Protein GI | 171059698 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3845] ABC-type uncharacterized transport systems, ATPase components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAGT TGATTCCCCC GCCCGTTGAA GTGACCGGCG CCGCCCGTGT CGAGATGATG
GGTTTCTCGA AACGCTTCGG CGCGCTGCAG GCGCTCGATG ACGTGTCGCT CACCGTCGAG
GCCGGATCCT TCCACGCGCT GCTGGGCGAA AACGGCGCCG GCAAGTCGAC GCTGGTCAAG
GCGCTGATCG GCTTCTACCA GGCCGACACC GGCAGCGTGT CGGTCGACGG CCGCGAGCGT
GCCATCGGCA GCCCGCGCGA CGCGGCGGCG CTCGGCCTGG GCATGATCTT TCAGCACTTC
ACCGTCGTGC CCGGCATGAC GGTGGCCGAG AACCTGGCGC TGGCCGGGCG CGATCTGACC
GCGCTGATCG ACTGGAAGGC CGAGCGTGCG CGCTTGGCCG CCTTCATGCG CACGGCGCCG
TTCCCGCTCG CGCTCGACGC CCGCGTGGCC GAGCTGGCCG CGGGCGAGAA GCAGAAGCTC
GAGATCCTCA AGGCGCTGTA CGCGCGGCGG CGTTTCCTGG TGCTCGACGA GCCCACCTCG
GTGCTGACGC CGCAGGAAGC CGACGAGGTG CTGGGCCGCG TCAAGGCGCT TTGCCGCGAG
GGGCAACTGT CGGTGCTGAT CATCACGCAC AAGTTCCGCG AGGTCTTCGG CTTCTGCGAC
GAGGTGACGG TGTTGCGGCG CGGCCGGCGT ACCGGCGGCA CGCGCGTGGT CGACACCTCG
CGCGACCAGC TCGCCAGCTG GATGATGGGC GTGCCGCACG ACGCCGCCGG GCCGACCGGT
GAGGTGCTGC CTTCGGCGCT GGTGGCGGAG CTGGTCGGTG TCGATGCGCC GGTCGCAGCC
GTCACGCCCG TCGCGCCGGA GGCCGCCACT CCTGCAGCCT CTGCCCCGCG CCTCAGGATC
GACGCGCTCA CGGTGCTCGG CCACGCCGGC CAGTCGGCGA TCGACCGGCT GCGGTTGCAG
GTCATGCCGG GCGAGATCGT CGGTGTGGCC GGGGTGTCCG GCAACGGCCA GCGCGAGCTG
GTGGCCGCGC TCACCGGCAC GTTGCCGATT GCCGGTGGCT CGGTGTTCGT CGACGGCCAG
CCCTATGCGC CGACGCGCGC GCAGATGCTC GCGCTCGGCG TGCGCAGCCT GCCCGAGGAG
CCGCTGCAGA ACGCCTGCGT CGGCAAGCTC TCGGTGGCCG AGAACCTGGC GCTGCGCAAC
TTCGACCGCG CGCCGCTGGC TGCCGGCCTG TGGCTGCGGC GCAGCGCGAT GCGCCGGCAG
GCGCTCGCCC ACATCGCCAA CTTCAAGGTC AAGACACCCG GCCCGGACGC GCCGATCGAG
ACGCTGTCGG GTGGCAACGT GCAGCGCGCC GTGCTGGCGC GTGAGCTGTC ACACGACCAG
GCCGGCGGGC CGCGGGTGCT GATCGTCGCC AACCCCTGTT TCGGCCTCGA TTTCCAGGCC
ACCGCCGAGA TCCACGCCCG CCTGCGCGCC GCACGCGACG CCGGCTGCGG CGTGCTGCTG
GTCAGCGAAG ACCTCGACGA GATCCTGGCG CTGGCCTCGC GGCTGGTGGT GCTGTCGCAC
GGCCGCGTGG CACTCGAATG CACCACCGCG ACGGCCGACA TCGCCCGCAT CGGCCACGCG
ATGGCCGGCG AAGGCGCCCA CGACAGCCAC CCCGTCCCAT CCACCGCCGA GGCCGCATGA
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| Protein sequence | MSELIPPPVE VTGAARVEMM GFSKRFGALQ ALDDVSLTVE AGSFHALLGE NGAGKSTLVK
ALIGFYQADT GSVSVDGRER AIGSPRDAAA LGLGMIFQHF TVVPGMTVAE NLALAGRDLT
ALIDWKAERA RLAAFMRTAP FPLALDARVA ELAAGEKQKL EILKALYARR RFLVLDEPTS
VLTPQEADEV LGRVKALCRE GQLSVLIITH KFREVFGFCD EVTVLRRGRR TGGTRVVDTS
RDQLASWMMG VPHDAAGPTG EVLPSALVAE LVGVDAPVAA VTPVAPEAAT PAASAPRLRI
DALTVLGHAG QSAIDRLRLQ VMPGEIVGVA GVSGNGQREL VAALTGTLPI AGGSVFVDGQ
PYAPTRAQML ALGVRSLPEE PLQNACVGKL SVAENLALRN FDRAPLAAGL WLRRSAMRRQ
ALAHIANFKV KTPGPDAPIE TLSGGNVQRA VLARELSHDQ AGGPRVLIVA NPCFGLDFQA
TAEIHARLRA ARDAGCGVLL VSEDLDEILA LASRLVVLSH GRVALECTTA TADIARIGHA
MAGEGAHDSH PVPSTAEAA
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