Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3021 |
Symbol | |
ID | 6160843 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3339890 |
End bp | 3340588 |
Gene Length | 699 bp |
Protein Length | 232 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641665796 |
Product | isochorismatase hydrolase |
Protein accession | YP_001792046 |
Protein GI | 171059697 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1335] Amidases related to nicotinamidase |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAACCCA TCGTCGACGC CCGTCCGTAT CCCTACGCAT TCGACCCCGC GCACACGGCA GTCGTGCTGA TCGACATGCA GCGCGATTTC CTGGAGCCCG GCGGCTTCGG CGCGATGCTG GGCAATGACG TGACGACGCT GCAGCGCATC GTGCCGGCCT GCCAGGCGCT GCTGGCGCTG GCGCGCGCGC ACGAGATGCG GGTCATCCAC ACGCAAGAGG CGCACGACGC GCAGCTGCTC GACTGCCCGC CGTCCAAGCG CGCGCGCGGC GGCTTGAGCT GCGGCATCGG CGATGTCGGT CCGCTCGGCC GGGTGCTGGT GGCCGGCGAG CCGGGCGCGG GTTTCGTCGC CGAGCTGCAG CCGCTGCCTG GCGAGACGGT GTTGCGCAAG CCGGGCAAGG GCGCCTTCCA CGCCACCGGG CTCGATGCCA TGCTGCGCGC CAGCGGCATC ACGCACCTGC TGATCGGCGG CGTCACCACC GAGGTCTGCG TGCAGACGAC GATGCGCGAG GCCAACGACC GCGGCTACGA GTGCCTGCTG GTCGAGGATT GCGCGGCGAG CTACTTCCCG CACTTTCACG CCGCGGTGGT CGAGATGGTG GTGGCGCAGG GCGGCATCGT CGGCTGGGCG GCGCCGCTGG CTGCCGTGCA GGATGCGCTG CGGGGCGCCA TGCAGGAGGC ACGTCCGGCC GCCGCTTAG
|
Protein sequence | MKPIVDARPY PYAFDPAHTA VVLIDMQRDF LEPGGFGAML GNDVTTLQRI VPACQALLAL ARAHEMRVIH TQEAHDAQLL DCPPSKRARG GLSCGIGDVG PLGRVLVAGE PGAGFVAELQ PLPGETVLRK PGKGAFHATG LDAMLRASGI THLLIGGVTT EVCVQTTMRE ANDRGYECLL VEDCAASYFP HFHAAVVEMV VAQGGIVGWA APLAAVQDAL RGAMQEARPA AA
|
| |