Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3004 |
Symbol | |
ID | 6163917 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3314124 |
End bp | 3315104 |
Gene Length | 981 bp |
Protein Length | 326 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641665779 |
Product | integrase catalytic region |
Protein accession | YP_001792029 |
Protein GI | 171059680 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2826] Transposase and inactivated derivatives, IS30 family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 74 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCTGG CGAGCATGAA ACAGCAGGGG TGCAGCATTC GCGCCATGGC GCGTGCGCTG GGGCGGCCGG CGAGCACGGT CAGTCGCGAA CTGCGCCGCA ACGTCAGCAC TGCGGGCGGG TATGCGAGTG TGCCCGCGCA ATCGATGCGC ACCGCGCGCC GCCAGGCCAG TCGACCGATG GCCAAACTCG ATCCGCGCAG TGTGATGTGG AGCGTCGTGC AGATCCTGCT GGGCTGGAAG TGGTCGCCCC AGCAGATCGC CGCTACGCTC GAGCGCGTGT TCCCCCAAGA GCCCGAACGT CGCGTGTCCC ACGAAACCAT CTACACGGCC ATCTACGCGC AACCCCGCGG TGAGTTGCGT CGCCAACTCA TCGCCTGCCT GCGCCAGGGC CACAGTACAC GCCTGCCACG CACGCGGGGC CAGGATCGGC GCGGCCAGAT CCCCGAGATG GTGAGCATCC ACGTGCGTCC GCCTGAGGTC GAGGATCGAC TCCTGCCCGG TCACTGGGAG GGCGACCTCA TCAAGGGCGC GGGCAATCAG TCCTCGGTGG GCGTGCTCGT AGAGCGCACC AGCCGTCTGG TCTTGCTGGC CAAGATGGAC GATGCGACGG CCGCTTCAGC GCTGGCGGGC TTTGCTGCCA AGCTCAATTC GATCACCGCG CCGATGCGCC AGAGTCTGAC CTACGACCAG GGCCGGGAGA TGAGCCGCCA CCAGGCGTTG GCCGCCGCGA CCGGCGTGAA GGTCTACTTC TGTGATCCGC ACAGCCCCTG GCAGCGCGGC ACCTGCGAGA ACACCAACGG GCTGCTGCGC CAGTACCTGC CCAAGGGCAC CGATCTGTCG GTCCATACGC AGGATGCGCT TGATGCCATT GCTGACAGCC TCAACAACCG GCCCCGCGCG ACGCACAACT TCCATTCGCC CCTGGAGGTA TTCGCAGCCG TGTTGAAAAA GCTCGATCAA CCCGATTCTT CTATTCATTG A
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Protein sequence | MTLASMKQQG CSIRAMARAL GRPASTVSRE LRRNVSTAGG YASVPAQSMR TARRQASRPM AKLDPRSVMW SVVQILLGWK WSPQQIAATL ERVFPQEPER RVSHETIYTA IYAQPRGELR RQLIACLRQG HSTRLPRTRG QDRRGQIPEM VSIHVRPPEV EDRLLPGHWE GDLIKGAGNQ SSVGVLVERT SRLVLLAKMD DATAASALAG FAAKLNSITA PMRQSLTYDQ GREMSRHQAL AAATGVKVYF CDPHSPWQRG TCENTNGLLR QYLPKGTDLS VHTQDALDAI ADSLNNRPRA THNFHSPLEV FAAVLKKLDQ PDSSIH
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