| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2950 |
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| Symbol | |
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| ID | 6159716 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3252040 |
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| End bp | 3253377 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641665729 |
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| Product | hypothetical protein |
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| Protein accession | YP_001791980 |
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| Protein GI | 171059631 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAAAGA TCAAGACCAC GATGCTGCAG ATCTGGGATC TGCTCGTCAC CGCCGGGCCG
GTCATCCTGC TGGCTGCGCT GCTGCTGGTG CTGGCCTACC GCTTCCTGAA CCCGACGCCG
CCCAAGACCA TGGTGCTGGC GACGGGGCCG CAGCAAGGCG CCTACGCCGA GTTCGGCAAG
CGCTACGCCG CCTCGCTGGC CAGGCACGGC ATCGCCGTCG AGCTGCGCGA AACCCGCGGC
TCGCAGGAGA ACCTGGCGCT GCTGCAGCAG GGCGCGGTCG ACGCGGCCTT CGTGCAAGGC
GGCGCCGATG ACGTGCGCGA GCTCGACGAA GCGCCGCCCG AAGGCCTGGC GAGCCTGGGC
AACCTGTTCC GCGAGCCGGT CTGGGTCTTC TACCGCGAAG CCGCCGTGCA CGAGCGCAAG
GGCCGGCGCA CGCCCGACAC CCTGGCGCAG CTCGACGGCT GGAAGATCAA CATCGGCCAC
GAAGGCAGCG GCGTCACCAA CCTGATGCGC CGCCTGATCG CCGCCAACGG GCTGGACCTG
GCCAAGCAGC GCCTCGGCCG CCTCGAACCC ACGCCCGCGG TGGTCGAGCT GCTGGCCGGG
CGCATCGACG CGCTGGCGCT GGTGTCGGCG CCCGAGTCGG CGCTGGTGCG CATGCTGCTG
ATCACGCCGG GCATCCGCCT GCTCGACTTC GCCCAGGCCG AGGCCTATTC GCGCCGCGTG
CCGCAGGTCG GCCCGGTGCT GCTGCCGCGC GGCGTGGTCG ATCTGGCCCG CGACCTGCCG
AAACAGGACG TGCGCCTGCT CGCCGCCAAC GCCACCCTGG TGGTGCGCGA CGAAACCCAC
CCCGCGCTGC AGCAGCTGCT GGTGCAGGCG GCCGGGCGCA TCCACGGCGA GGCCAACTGG
TTCCAGCGCA AGGGCGAGTT CCCGCAGGCC GGCGCCAGCG AGTTCGCGCT GGCCGCCGAG
GCCCAGCGCT TCTACGAGAC CGGCACGCCG CTGCTGCAGC GCTACCTGCC GTTCTGGGCC
GCCAACCTGG TCGACCGGAT GTGGGTGGTG CTGGTGACGA TCATCGCGGT GCTGCTGCCG
CTGTCGCGCG TGGTGCCGCC GCTCTACACG CTGCGCATCC GCTCGCGCAT CTTCCGCTGG
TACGGCAAGC TGCGCGACAT CGAGGAGCAG GCCAGCCGCG AAGGCCGCAA CCAGGAAGAC
ACGAAGCAGC TGCTCGAAGA ACTGGCCGAG GTCGACGCAC GCGTCGAGCG CCTGCCGGTG
CCGCTGTCGC ACGCCGAGGA GCTGTACGCG CTGCGCAGCC ACATCAGGCT GGTGAGGCGG
CGTCTGCAGG AGGATTGA
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| Protein sequence | MRKIKTTMLQ IWDLLVTAGP VILLAALLLV LAYRFLNPTP PKTMVLATGP QQGAYAEFGK
RYAASLARHG IAVELRETRG SQENLALLQQ GAVDAAFVQG GADDVRELDE APPEGLASLG
NLFREPVWVF YREAAVHERK GRRTPDTLAQ LDGWKINIGH EGSGVTNLMR RLIAANGLDL
AKQRLGRLEP TPAVVELLAG RIDALALVSA PESALVRMLL ITPGIRLLDF AQAEAYSRRV
PQVGPVLLPR GVVDLARDLP KQDVRLLAAN ATLVVRDETH PALQQLLVQA AGRIHGEANW
FQRKGEFPQA GASEFALAAE AQRFYETGTP LLQRYLPFWA ANLVDRMWVV LVTIIAVLLP
LSRVVPPLYT LRIRSRIFRW YGKLRDIEEQ ASREGRNQED TKQLLEELAE VDARVERLPV
PLSHAEELYA LRSHIRLVRR RLQED
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