| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2931 |
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| Symbol | |
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| ID | 6160109 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3233404 |
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| End bp | 3234114 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641665710 |
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| Product | fimbrial biogenesis protein |
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| Protein accession | YP_001791961 |
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| Protein GI | 171059612 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4966] Tfp pilus assembly protein PilW |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGACA GAAGCACCGG CCTGGGCCTG ATCGAGATCA TGGTGGCGAT CGCGCTGGGG
CTGTTCCTGG TGGCCAGCGT GGCGGCGCTG GTGGTCGGGC AACTGGCCGA ACAGCGCCGG
CTGCTGCTCG AATCGCGCCT CAACCAGGAC CTGCGCGCCA CCGCCGACCT GATCGTGCGC
GACCTGCGCC GCGCCGGTCA CTGGGGCAGC GCCGAACGTG GCGTGTGGTC GGGCGGCCCG
ACTGCCCCCG CAGCCAATCC CTACGCCGGC CTGCATCCCG GCGCCGACAC CGCCGCCGCC
AGCCTGGGCT ACAGCTACAG CCGCGACACC ACCGAAGACC AGGCCAGCGG CAACGCCGAA
AAGTTCGGCT TTCGCATCAA CACCAACACC CGCGCCTTCG AACTGCGCCT GGCCGGCAAC
GACATCACGC CCGGCAACGG CGACCAGTGG CAGGCCCTCA CCGACCCGGC CCTGCTGCGC
GTCACGCGCT GGCAGGTGCG CCACGAATCG CGGTCGGTGA GCCTGCTCGG CCACTGCGCC
ATCCCGGTCT GCCCCACCGG CAGCAGCACC TGTCCGCCCA CCGTGCGGCT GCGTCAGGTC
CACATCGAGC TCGACGCCAC CGACGCACGC GACAGCAGCG TGCAGCGCAG CCTGGTGACG
CGGGTGCGAC TGCGCAACGA CGAGGTCAGC GGTGCCTGCC CGGGGGCCTG A
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| Protein sequence | MPDRSTGLGL IEIMVAIALG LFLVASVAAL VVGQLAEQRR LLLESRLNQD LRATADLIVR
DLRRAGHWGS AERGVWSGGP TAPAANPYAG LHPGADTAAA SLGYSYSRDT TEDQASGNAE
KFGFRINTNT RAFELRLAGN DITPGNGDQW QALTDPALLR VTRWQVRHES RSVSLLGHCA
IPVCPTGSST CPPTVRLRQV HIELDATDAR DSSVQRSLVT RVRLRNDEVS GACPGA
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