Gene Lcho_2930 details

Gene Information

• Locus tag: Lcho_2930
• ID: 6160032
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3232949
• End bp: 3233398
• Gene Length: 450 bp
• Protein Length: 149 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 641665709
• Product: type IV pilus assembly protein
• Protein accession: YP_001791960
• Protein GI: 171059611
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4968] Tfp pilus assembly protein PilE
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 42
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCTGAAAC ACCGCGGCTT CACGCTCATC GAACTGCTGA TCGGCGTGGC GGTGCTCGCC 
ATCGTGTCCA CGCTGGCCTG GCCCAGCTAT CAGCAGCAGG TGCAACGGGC TCGCAGGGCC 
GATGCCTACG CCGCCCTCGC CCGCCTGCAG CAGGCCCAGG AGCGCCGACG CAGCCAGCTG 
CCGGCCTACA CCGCCACGCT CGGTGAAGGC GGCCTCGGCC TGAGCGCCGC CAGCACCGAC 
GGCCACTACG CGTTGTCCAC CAGCGTCGCC GACGAAACCG CCGGCACGGC CTACCGCGTC 
AGCGCCAGCG CATCGGGCGC GCAGAGTGCG GACACCGCCT GCCGCCACCT GGCGATCGAC 
GTCGACGGCG GCCGCCTGCA GATGCGCTCG GGCAGCAGTT CCGCGCTGGG CAACGACAGC 
GCCACCAACC TGCGCTGCTG GAACCTGTGA 

 

Protein sequence

MLKHRGFTLI ELLIGVAVLA IVSTLAWPSY QQQVQRARRA DAYAALARLQ QAQERRRSQL 
PAYTATLGEG GLGLSAASTD GHYALSTSVA DETAGTAYRV SASASGAQSA DTACRHLAID 
VDGGRLQMRS GSSSALGNDS ATNLRCWNL