| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2926 |
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| Symbol | |
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| ID | 6160028 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3229284 |
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| End bp | 3230219 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641665705 |
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| Product | lytic transglycosylase catalytic |
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| Protein accession | YP_001791956 |
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| Protein GI | 171059607 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTGCAT TCCGATCCTG GGCACATCTG CGTCTGGCTG TATTGGCGTC TGTCCGTGTG
TTCTTTTCCG ACCTGGGTCA CGGCATGCTT GCCGTCGGCC ACAACAGCCT GGCTGTGATC
GGCCTGGCCG TGCTGAGCGC GGTGTTCGTG TTGGGTGGCC GTGCCGAAGT GCGTGGCGTC
CTCGAAGAGC GGGCCCTCGA CTGGCTGCTC GAACGCCAGG AAGCCCGCGC CGTCGGCGCT
GACGACCTGA TCGAGGTGGG CGACCTGTCG GCCGTCGACC GCGCGACCGC GATCGACCCG
GCCGAGCTCA ACCGCCAGCA GGCGACCGTC GCGCAGTGGC TGGCCAGGCG CTACCGCGTC
GCCCCCGAGC CGGTCAGCCG TCTTGTCCAG GAAGCCTGGA GCCTGGGCCA GCGCGTCGGC
CTCGAACCGA CGTTGATCCT CGCCATCATG GCGATCGAGT CGAGCTTCAA TCCGTTCGCC
CAGAGTTCCG TCGGCGCGCA GGGTCTGATG CAGGTGATGA CCCGCGTGCA TGACGACAAG
TACGAGGCCT TCGGCGGCAA CCACGCCGCC TTCGACCCGC TGACCAACCT GCGCGTGGGC
GTGCAGGTCC TGAAGGATTG CATCGCCCGG GCCGGCTCGC TCGAGGGCGG CCTGCGCTAC
TACGTCGGCG CAGCCAACCT GGCCGACGAC GGCGGTTATG CGTTCAAGGT GCTGGCCGAG
CAGGAGTTCA TGCAGCAGCT GCTGCGTGGC CGCTCGGTGC CTGCGACGGC GCGACTGCCG
GTGCCACCGG TCCCTGTCGG CAGCGCAGCG TCCAGCCCCG TGACGACTCA GGCACAGGCC
GACAGCCCGG CAGCCGCACG CCCGACGACC AAGCCGCCGG CTGCACCGGC CGAGCGCAAG
AGCAACAAAC CCGAGCGACT GGCGCTCGCG CAGTGA
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| Protein sequence | MLAFRSWAHL RLAVLASVRV FFSDLGHGML AVGHNSLAVI GLAVLSAVFV LGGRAEVRGV
LEERALDWLL ERQEARAVGA DDLIEVGDLS AVDRATAIDP AELNRQQATV AQWLARRYRV
APEPVSRLVQ EAWSLGQRVG LEPTLILAIM AIESSFNPFA QSSVGAQGLM QVMTRVHDDK
YEAFGGNHAA FDPLTNLRVG VQVLKDCIAR AGSLEGGLRY YVGAANLADD GGYAFKVLAE
QEFMQQLLRG RSVPATARLP VPPVPVGSAA SSPVTTQAQA DSPAAARPTT KPPAAPAERK
SNKPERLALA Q
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