| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2916 |
|---|
| Symbol | |
|---|
| ID | 6159999 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3214600 |
|---|
| End bp | 3218949 |
|---|
| Gene Length | 4350 bp |
|---|
| Protein Length | 1449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641665695 |
|---|
| Product | non-specific serine/threonine protein kinase |
|---|
| Protein accession | YP_001791946 |
|---|
| Protein GI | 171059597 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCATGA CCCCATCCCC CGCCGATCCG GCCCTCGACA TCGCGCGCGA CCTGCCGCGC
CTGCCCCATG ACGCACTGAA CGCCCTGCAC GCGCTGGCGC TGGGCGCCGC GCCCCGGCCG
CGCACCTGGG TGATGGGCCT GATGGTCGAG CTCGGCTGGC GCGACAGCCA GAACCGCCGC
TACACCAACG ACAGCGTGCG GGTGGCGCTG GCCCTGCTGG CCGAGCAGGC CTGGATCGCC
GAGGCCTCCA CCAAGCCGGG CTTCTGGCAG ATCCATCCGC TGGTGCTGAG CGCGGTCTAC
CGCCACCTGC TCGACCAGTA CCCGAGCGCC GACCTGCTGG CCGCGCTGGT GCGCCACGAA
CACTTCGGCG GCCTGGGCGG CGCGCGCGGC TACGACCATT TCCCGACCGT CGAAGCCGGC
TGCGCGCTGA CACGGCTGTC GCTGCTGAGC GGCCACGGGC CGGCCGAGGT CGAGCGCCTG
AAAGCCGGCT GCGCCTGGGG CATGAGCTGG GAGCACGTGT TCGGCCGCGC CGTGCTCGAC
GTGCTCGACC AGCCCCTGTT CAACCACCTG CACCCCGCCG TGCAGGTCGA GGTGCTCAAC
CACGAGCTGG CCCAGCTCAA CGGCCACTGG CTGGCGCAGA CCGCCCTGCC GGCGGCCAGC
CTGACCGAGA CGCTGCTGGC CTGGCGCGGC CGGCCGGCCA CCCATGCCGG CGCATCGGGC
GCCGGCCTCG ACCTCGCCGC GCTGCGCCTG AACTGGGCCG AGACCCTGCT GCTGGCCGGC
CGCCACGACG AGATCGCCGC CGTGATGCAG CCGCTGGTGC AGCAGCACCC GGCCTGGGCG
CCGGTGGCGC AGGTGCTCGA CGCCGCGCGC CTGAGCCGCC AGGCCGATTG GCCGCAGGCG
CTGGCCGGCT ACGAACAGGC GCTGGCGCAG ATGAAGAAGG ACACCGGCCA GCGCAAGGGC
CTGCTGTCGC TGACGCTGGC CACGCCGTAT GTGCTGTCGC TGATGGCGCA GCGCGAGCCG
GCGCAGTGGC AGGTCGCGCT CAAGTTCTGC CTGGCCGAAG CCGGCAAGCG CAGTCCCAGC
CCCGACACCG CCTGGGGCCT GATGGCACTG GCGCTGCAGA TGCGCCTGGG CGAGGCGCGC
CGTGACCTGT CGCTGATGCG CCCGCACAGC CGCACGCCCT ACGTGATGAC GCTCGACTGG
TGGCGCTGGC TGATGCGCGC CTGGCTGACC GAACAGGGCG ACGCGCCCGA AGACGCCACG
CTCGAAGGCG CCACGCTCGA CCCCCACGAC CAGGCCGCCG CCGCGCTGCT GCGCCGCCGC
CTGGTGTCGG CCGGCCATCT GGGCCTGGTC GAGCAGCTCG ACGCCGCGCT GGCGGTGATC
CAGCACCAGC CCAGCCCGGA GTGGTTCTTC GTGCCGCCGC CTCGGGCCGG CTGGGAAGTG
GCGCTGGCCG CGCTGGCCGC CATCGGCAGC GGCGCGCCGG CCGGCCCGGC CGGGGGCGCC
GCGCTGGCCG AGACGCGGCT GTGGTGGCAG CTCGACGTCA GCCCGCAGGG CGCGCTGCGC
GCCATCACGC CGCTCGAGCA GAAACAGGGC CCGCGCGGCT GGGGCAAGGG CAAGGTGGTG
GGCCTGGCCC GCCTCGCCAA GACCGAGAGC CTGCCGCCGT GGGACGCCGC GGTGGCGCGC
TGCATCCGCC AGAACACCGC CGACCGCAGC CTGCGCATCG ACCTGGCTGC TGCCGCCGCC
GCGCTGATCG GCCATCCGCT GGCGGCCTGG GCCGACGCAC CCGATCTGCC GGTCACGCTG
GTCGAGGCCA GCCCCGAGAT CGAGGTGATC GACCACGGCG ACACGCTGCA GGTGCGCCTC
ACCCCGCCGC CGCGCAGCGG TCTCGACGAC GACGGCGAGG CCGACCTCAA CGACGACTGG
GGACGCCGCT GGCAACCCAG CGCCGCCGAG CTGAAGGAGG CCGAGGCCCT GCGCGGTCTG
ACGCTGCTGC GCGACGAGCC GCAGCGCGCC CGCGTGATCC GCTACAGCGC GGCGCAGAAA
CGCGTCGCCC AGCTGGTCGG CGCCGGCCTC ACGGTGCCCA AGTCGGCGGT CGCGCAGCTG
CAGCCGGTGC TGCACAACCT GGGCGCGCAT TTCCACATCC ACGCCGACGA GCTGCAGGCC
AGCCGCGAGG TGCCGGCCGA TCCGCGCCTG CGCGCCGAGC TGACGCCCGA GGGCGACGGC
GTGCGGCTGC GGCTGGTGGT GGCGCCGTTC GGCGACGACG GCCCGCGCCA GACACCCGGC
CACGGCCGCG CCCGCCTGAT CGCCGCGGTC AAGGGCGAGA CGCTGGGCGC GCAGCGCGAC
TTGGCGGCCG AGCTCGGCCA CCTCGAGACG GTGATGGACG CCTGCCCGAT GCTCACGCCG
CTGCCGGTGC CGCGCACGCC CGGCCAGCTG GTGCCGGCGC AGTGGGCGAT CGAGAACGCC
GATGCCACGC TGGCGCTGAT CGAGCGCCTG CACAGCCTCA ACGCGGTGGC CGCGCTCGAC
TGGCCGAAAG GCCGCTCGAT CCGCGTCGAC AGCGTCGGCA TCGGCCAGCT CAGCGTGCAG
GTCCAGTCCG GCAACGAATG GCTGGCGCTG CAGGGCGGCC TGCAGGTCGA TGAGAAGCTG
GTGTTCAGCC TCGGCCAGCT GCTCGACTGG AGCGACAGCT CCCGCAGCCG CTTCGTGCCG
CTGGGCGAAG GCCGCTACCT GGCGCTGACC GAGGAGCTGC GCGCCCGCCT CGACGACCTC
GCCGCCGTCG CCGAACTGCA GCGCAAGGCC GGCGAAACCA CCGCCCGGCT CGCCCCGGTG
GCCGCGGCCT GGCTCGACAG CGCGCTGGCC GGCGCCCAGG TGCAGACCGA CGGCGCCTTC
CAGGACCGGC TCGAAACCCT GGTGCGCGCG CAGCACTGGG CGCCCGGGCT GCCGGCCACG
CTGCAGGCGC AGCTGCGGCC GTATCAGGAA GAAGGCTACC AATGGGCGAT GCGGCTGGCC
GAGGCCGGCC TGGGCGCGGT GCTGGCCGAC GACATGGGCC TGGGCAAGAC GCTGCAGGCG
CTGGCCGTGC TGCTCGAGCG CGCCGCCGGC GGCCCCGCGC TGGTGGTGGC GCCGACCTCG
CTGATCGGCA ACTGGCAGGC CGAGGCGCGC CGCTTCGCAC CCACGCTCAA TCTGCTGGCC
TACGCCGAAG GCGACGAACG CGGCAACCGC GACGCGCTGA TCGAGGCCGC CGGCCCGGGC
GACGTCATCG TCGTGTCCTA CCAGATGCAG CAGGTCAACG CAGAGGCCTT TGCCGGACGC
AGCTGGCACA CGCTGGTGCT CGACGAGGCG CAGGCGATCA AGAACGCCGC GGCCAAGCGC
AGCCAGGCGG CGTTCGAGCT GAGCGCGGGC TTCCGGCTGG CGCTGTCGGG CACGCCGATC
GAGAACCGGC TGACCGAGCT GTGGTCGATC ATGCGGGTCT GCAACCCCGG GCTGCTGGGC
ACGCTGGCGC AGTTCAACAG CCGCTTCGCG GTGCCGATCG AGCGCGACCG CCACCGCGGC
GCCCAGCGCA CGTTGCGCCG GCTGATCGCG CCCTTCATCC TGCGCCGCAG CAAGGCCGAG
GTGCTCGACG ACCTGCCCCC GCGCACCGAA CAGACCCTGA TGGTGCAAGG CAACGCCACC
GAACAGGCCC ACTACGAGGC GCTGCGCCGC CAGGCCCTGC GCGACGCCGA GCGGGCAATG
AGCGCCGACG GCGCCGGCCA GGCGCACCTC AACATCCTGG CCCAGCTGAT GCGCCTGCGG
CGCGCCGCCT GCGACCCGCG GCTGGTCACG CCCGACCTGG TCCAGCCCGG CGCCAAGGTG
ATGGCGTTCG GCGAGCTGGC GGCCGAGCTG GTCGCCAACG GCCACAAGGC GCTGGTGTTC
AGCCAGTTCG TCGACTTCCT GGCGCTGCTG CGCGAGCCGC TCGACGCCGC CGGCCTGCGC
TACCAGTACC TCGACGGCAG CACGCCGTCG GCCGAGCGCA CCCGGCGCGT CGCCGCCTTC
CAGGCCGGTG AGGGCGATTT CTTCCTGATC AGCCTGAAGG CCGGCGGCTT CGGCCTGAAC
CTGACGGTGG CCGACTACGT CGTGATCGCC GACCCGTGGT GGAACCCCGC CGCCGAGGAC
CAGGCCAGCG GCCGCGCCCA CCGCATCGGC CAGCAGCGGC CGGTGACGGT CTATCGGCTG
GTCAACAAGG GCACGCTGGA GGAGAAGATC GTGGCGCTGC ACGCGGACAA GCGCGAGCTC
GCCGACAGCG TGCTCGAGGC CGACCGCGAC GGCCGCCAGG GCGCCGGCGT GCTCAAGGTC
GACGAACTGA TGAGCCTGAT GATGGGCTGA
|
|---|
| Protein sequence | MPMTPSPADP ALDIARDLPR LPHDALNALH ALALGAAPRP RTWVMGLMVE LGWRDSQNRR
YTNDSVRVAL ALLAEQAWIA EASTKPGFWQ IHPLVLSAVY RHLLDQYPSA DLLAALVRHE
HFGGLGGARG YDHFPTVEAG CALTRLSLLS GHGPAEVERL KAGCAWGMSW EHVFGRAVLD
VLDQPLFNHL HPAVQVEVLN HELAQLNGHW LAQTALPAAS LTETLLAWRG RPATHAGASG
AGLDLAALRL NWAETLLLAG RHDEIAAVMQ PLVQQHPAWA PVAQVLDAAR LSRQADWPQA
LAGYEQALAQ MKKDTGQRKG LLSLTLATPY VLSLMAQREP AQWQVALKFC LAEAGKRSPS
PDTAWGLMAL ALQMRLGEAR RDLSLMRPHS RTPYVMTLDW WRWLMRAWLT EQGDAPEDAT
LEGATLDPHD QAAAALLRRR LVSAGHLGLV EQLDAALAVI QHQPSPEWFF VPPPRAGWEV
ALAALAAIGS GAPAGPAGGA ALAETRLWWQ LDVSPQGALR AITPLEQKQG PRGWGKGKVV
GLARLAKTES LPPWDAAVAR CIRQNTADRS LRIDLAAAAA ALIGHPLAAW ADAPDLPVTL
VEASPEIEVI DHGDTLQVRL TPPPRSGLDD DGEADLNDDW GRRWQPSAAE LKEAEALRGL
TLLRDEPQRA RVIRYSAAQK RVAQLVGAGL TVPKSAVAQL QPVLHNLGAH FHIHADELQA
SREVPADPRL RAELTPEGDG VRLRLVVAPF GDDGPRQTPG HGRARLIAAV KGETLGAQRD
LAAELGHLET VMDACPMLTP LPVPRTPGQL VPAQWAIENA DATLALIERL HSLNAVAALD
WPKGRSIRVD SVGIGQLSVQ VQSGNEWLAL QGGLQVDEKL VFSLGQLLDW SDSSRSRFVP
LGEGRYLALT EELRARLDDL AAVAELQRKA GETTARLAPV AAAWLDSALA GAQVQTDGAF
QDRLETLVRA QHWAPGLPAT LQAQLRPYQE EGYQWAMRLA EAGLGAVLAD DMGLGKTLQA
LAVLLERAAG GPALVVAPTS LIGNWQAEAR RFAPTLNLLA YAEGDERGNR DALIEAAGPG
DVIVVSYQMQ QVNAEAFAGR SWHTLVLDEA QAIKNAAAKR SQAAFELSAG FRLALSGTPI
ENRLTELWSI MRVCNPGLLG TLAQFNSRFA VPIERDRHRG AQRTLRRLIA PFILRRSKAE
VLDDLPPRTE QTLMVQGNAT EQAHYEALRR QALRDAERAM SADGAGQAHL NILAQLMRLR
RAACDPRLVT PDLVQPGAKV MAFGELAAEL VANGHKALVF SQFVDFLALL REPLDAAGLR
YQYLDGSTPS AERTRRVAAF QAGEGDFFLI SLKAGGFGLN LTVADYVVIA DPWWNPAAED
QASGRAHRIG QQRPVTVYRL VNKGTLEEKI VALHADKREL ADSVLEADRD GRQGAGVLKV
DELMSLMMG
|
|---|
| |