| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2905 |
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| Symbol | |
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| ID | 6160235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3201174 |
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| End bp | 3201812 |
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| Gene Length | 639 bp |
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| Protein Length | 212 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641665684 |
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| Product | Tfp pilus assembly protein FimT |
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| Protein accession | YP_001791935 |
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| Protein GI | 171059586 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.538943 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAAGC CCGGGCGTGT GGCGAGCGGC CCGGTGGCGG CAGGCTTCTC GCTGATCGAG
CTGATGGTGA CGATGACCAT CCTCGGCCTG CTGCTGCTGG CCACGATGCC CAGCATCGGC
GCCTGGCTGC GCAACACCGA GATCCGCAAC GCCGCCGAGT CGATCAACAG CGGGCTGGCC
AAGGCCCGCA GCGAGGCGGT GCGGCGCAAC CAGCCGGTGC TGTTCTCTCT GGTGACGCCG
CAGAGCGGCA ACCCGGGCGT GCTCGACAAC AGCTGCGCGC TGTCGGCCAC GTCGGCGTCG
TGGGTGGTCA GCCTGGAGAC GCCGGAAACC CAATGCGCCG TGGCCGTCAG CGAGGACACC
TCACCCAAGA TCCTCGCCAA GTACGCCCAG GGCGACGGTG CGCGCAACGT CGCCATCGCC
ATCAAGAATG CCGACTGCAG CGCCGCGGCC AGCACCACCC AGGTCAGCTA CAACAGCTAC
GGTCGCATCA CCACGCCGGC ATCGGCACTG CGCTGCATCG ACATCAGCCA CACCGCCAGC
GGAGCCAGCC GGCCGCTGCG CCTGATGCTG GGCAACGGCG GCAACGTGCG CATGTGCGAC
CCCGCCGTCA CCGACGACAA CGACCCGCGC AAGTGCTGA
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| Protein sequence | MLKPGRVASG PVAAGFSLIE LMVTMTILGL LLLATMPSIG AWLRNTEIRN AAESINSGLA
KARSEAVRRN QPVLFSLVTP QSGNPGVLDN SCALSATSAS WVVSLETPET QCAVAVSEDT
SPKILAKYAQ GDGARNVAIA IKNADCSAAA STTQVSYNSY GRITTPASAL RCIDISHTAS
GASRPLRLML GNGGNVRMCD PAVTDDNDPR KC
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