| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2875 |
|---|
| Symbol | |
|---|
| ID | 6159848 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3165278 |
|---|
| End bp | 3166387 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641665654 |
|---|
| Product | RluA family pseudouridine synthase |
|---|
| Protein accession | YP_001791905 |
|---|
| Protein GI | 171059556 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.767163 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGGGG TTTCCGTGGT CGACGAATCG AGGCCGCTCG GCGATGACGA GGTCGTGGCC
GACGACGACG AGGTCGCATC GGCCGATGCG GCGACGGTCG AGCCGCTGGA AGTCGAGCGG
CGCCTGGCGG TGGTCGAGGC TGCTGCGCAT GGCGAACGGC TCGACAAGTG GCTGGTGCGC
ATCGCGCCCG AGTTCTCTCG CGCTCATCTG CAGGGGCTGG TCGAGGGGGG TCATGTGCGC
TGCGGCGAGC AGGTGCTGCG GCAGTCGCAC AAGAAGGTGA TGGCCGGCCA GCAGATCGAA
GTGGCGCTCT GGCCGACCGC GCAGAGCACG GCCTTTCGCG CCGAGGCGAT GACGCTGGCG
GTGGTCCACG AGGACGCGCA CCTGCTGGTC ATCGACAAGC CGGCCGGCCT GGTGGTGCAC
CCGGCGGCGG GCCACTGGAG CGGCACCCTG CTCAACGGCC TGCTGGCGCA TCACGCCGCG
GCGGCCCACC TGCCACGTGC CGGCATCGTG CATCGGCTCG ACAAGGACAC CTCGGGCCTG
ATGCTGGTGG CCAAGTCGCT GCAGGCGCAC ACCGCGCTGG TGCGGGCGAT CGCGGCACGC
GACGTCAAGC GCGAGTACCT GGCGCTCGTG CATGGCGCGG TGATGGACGG CCTGCAGGTG
ATCGATGCGC CGCTCGGCCG CGATCCGGTG TCGCGCGTGC GCATGGCGAT CGTTGCCAGC
GGCAAGCCAG CGCGCACCGA CGTGCGGCGT CTTGCGGTGG CCGAGCTGCC CGGTGACGGC
GTTCGCCAGT TGCCCGGCGC CACCCGCGCG CCGCGGCAGG TGAGCGCCGT TCACTGCCAG
CTGCACACCG GGCGCACGCA TCAGATCCGG GTGCATCTGG CTTCGCGTGG CCACCCCTTG
CTGGCCGACG CCATGTACGG TGGCGCGCCG GCCTTCGGTC TGCAGCGACA GGCCTTGCAC
GCGGCACGGC TGCATCTGCT GCATCCGATC GATGGTCGGC CGCTGGCCTT CGAAGCCGCA
CTGCCGGCCG ATCTGGCGCT GGCCTGGCGC GCGGTTGCGG GAGATCCCGC GAGTGCATTG
CCGCCATATG GCTACAATCG GGGCCAATAA
|
|---|
| Protein sequence | MNGVSVVDES RPLGDDEVVA DDDEVASADA ATVEPLEVER RLAVVEAAAH GERLDKWLVR
IAPEFSRAHL QGLVEGGHVR CGEQVLRQSH KKVMAGQQIE VALWPTAQST AFRAEAMTLA
VVHEDAHLLV IDKPAGLVVH PAAGHWSGTL LNGLLAHHAA AAHLPRAGIV HRLDKDTSGL
MLVAKSLQAH TALVRAIAAR DVKREYLALV HGAVMDGLQV IDAPLGRDPV SRVRMAIVAS
GKPARTDVRR LAVAELPGDG VRQLPGATRA PRQVSAVHCQ LHTGRTHQIR VHLASRGHPL
LADAMYGGAP AFGLQRQALH AARLHLLHPI DGRPLAFEAA LPADLALAWR AVAGDPASAL
PPYGYNRGQ
|
|---|
| |