| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2852 |
|---|
| Symbol | |
|---|
| ID | 6162604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 3139155 |
|---|
| End bp | 3140522 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641665630 |
|---|
| Product | D-amino-acid dehydrogenase |
|---|
| Protein accession | YP_001791882 |
|---|
| Protein GI | 171059533 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.196482 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGTCG GGGTCGTCGG TGCCGGCATT GCCGGAGTCA CCACCGCGTT CGAGCTGGCC
GAAGCCGGCC ACGAAGTGAC CGTGTACGAG CGCTGCGATG CGGTCGCCGA GGCCGCCAGC
TTCGCCCACG CCGGGCTGCT GACGGCCGGA CTGGTGTCCC CGGCCGCAGC ACCCGGCCTG
CGTCGCTGGC TGCTGCGCGG ACTGCGCCAC CACGAGTCGG CGCTGCGCTG GCGCCCCGGC
CTGGATCCGG CGCACTACCA GTGGCTGTGG CAATGGTGGC GCGCCAGCAG CAGCGGACAC
GCCGGCGACG TGCGCGCCAT GACCGAGCTG GCGGTCATCA GCCTGCAGCG CCTCGACCAG
CTCACCCGCG ACCTCGGCCT CAGCCACGAG CGCAGCCGCG GCGTGCTGGT GCTGCTGCGC
GACAGCCGCG AGCTCGCGCC CACCCACCGC CACGCCGGCA TGCTGCGCGA GCTGGGCTGG
GCAGTGAACG AGCTGACGCC GCAGGCCTGC CTGGAGATCG AGCCCCACCT CGGCCGTTCG
CGCCTGGCCG GCGGCCTGCA CCTGCCCGAC GACGGTGTCG GCAACTGTCG CCAGATGACC
CAGCAGCTGC GCGACCACGC CGAGCGGCGC CAGGGCGTGC AGTTCACGTT CGGCACCGAG
GTCGGCGCCA TCCGCACCGA GGGCCGACAG ATCACCCTGC AGCTGCGCGC ACGTGAGCGC
GACGCTGCCA CGCCCTCACG GCCCGGGCCC GTGCTGCGAA GCCGCGCCAG TGCGGCCCAT
CCGCCCGATA CCGCCGAGGC CGACTTCGTG CCGACCCAGC CGCTCGACCG CGATCGTCAG
GCAACCCACG ATGCCGTGGT GCTGTGCAGC GGCGCCGACA CGACACTGGT CCACCGGCAC
GCCCAGGCCC TGCCGATCCA GCCGGTCTGG GGTCACGCCG CCACCTTCCG CATCCATCCG
GACGGTCAGG CGCTGCAATC GGCGGTGGTC GACGCCAGCG CGGGGGTGAC GCTGTCACGG
CTGGGCCCGC GGTTGCGCGT GACCGGCGGC TTCGAGCTCG GTGGCTCGCC GGGCCCGGCC
GGCGAGGCCG CGCTGAGCCC GCTCTATGCC GCGCTGGACC GCTGGTTTCC GCATGCGACC
GAGCGCCGGC AGGCGCAGAT CTGGCGCGGC GCGCGGCCGA TGCTGCCGCA CGGCCCGCCG
GTGATCGGGC CGAGCGCGAC GCCGGGCGTC TGGCTCAACC TCGGCCACGG CGCCCACGGC
TGGACACTGG CCTGCGGCAG CGCGCGCCTG CTGGCCGAAC AGATCAGCGG CCGGCCCTGC
TCGACCGATC CGGCGCCGTT TGCGGCCTCA CGCTGGGCGC ACCCATGA
|
|---|
| Protein sequence | MRVGVVGAGI AGVTTAFELA EAGHEVTVYE RCDAVAEAAS FAHAGLLTAG LVSPAAAPGL
RRWLLRGLRH HESALRWRPG LDPAHYQWLW QWWRASSSGH AGDVRAMTEL AVISLQRLDQ
LTRDLGLSHE RSRGVLVLLR DSRELAPTHR HAGMLRELGW AVNELTPQAC LEIEPHLGRS
RLAGGLHLPD DGVGNCRQMT QQLRDHAERR QGVQFTFGTE VGAIRTEGRQ ITLQLRARER
DAATPSRPGP VLRSRASAAH PPDTAEADFV PTQPLDRDRQ ATHDAVVLCS GADTTLVHRH
AQALPIQPVW GHAATFRIHP DGQALQSAVV DASAGVTLSR LGPRLRVTGG FELGGSPGPA
GEAALSPLYA ALDRWFPHAT ERRQAQIWRG ARPMLPHGPP VIGPSATPGV WLNLGHGAHG
WTLACGSARL LAEQISGRPC STDPAPFAAS RWAHP
|
|---|
| |