Gene Lcho_2793 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2793 
Symbol 
ID6162200 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp3077154 
End bp3077783 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content69% 
IMG OID641665571 
Productdual specificity protein phosphatase 
Protein accessionYP_001791823 
Protein GI171059474 
COG category[T] Signal transduction mechanisms 
COG ID[COG2453] Predicted protein-tyrosine phosphatase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0000240019 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACACACG ACCACGCACA TCACCGCGCA CCGACGACGC AAGCCGAACA TCTGGCAGCG 
CTCACCAGCC CTAACCTGGT CAGAACCAGC CTGAGCCACC CCCTGCGGAT CGACGAGGTT 
GCGGCAGGTC GCTGCGGCGG GCGGATCGGG ATTTCGCTGT GTCCGGGCAA GCGCGCCAGC 
AGCCTGCTCG GGCCGCGCTG GGAACGCGAC CTCGCGGCCG ATATCGACGT GATCCGTCGC 
TGGCGGCCTG ACGCCGTGGT GACGCTGATC GAGGATCACG AGTTCATCGA ACTGAACGTG 
ATCCAGCTCG GCGCCCAAGT GCGCGCCAGC GGGATTGCCT GGCATCACCT GCCCATCGTC 
GACGTGCATC CGCCCGATGA GCGATTCGAG ACCGGCTGGC AGACGAGCGG CCCGGCGCTG 
GTCGGATGCC TGAACGCAGG CGGGCGCGTG CTGGTGCATT GCCGCGGGGG GCTGGGCCGT 
GCGGGCACGG TGGCGGCGCG CATGCTGGTC GAACTGGACG TCCCGGCCCC GGACGCCGTC 
GCGCGGGTTC GCCAGGCGCG ACCGGGCGCG ATCGAAACCG CCGATCAACT GAACTACGTG 
CTGCGACTGC AGGACATCTG CAACGCCTGA
 
Protein sequence
MTHDHAHHRA PTTQAEHLAA LTSPNLVRTS LSHPLRIDEV AAGRCGGRIG ISLCPGKRAS 
SLLGPRWERD LAADIDVIRR WRPDAVVTLI EDHEFIELNV IQLGAQVRAS GIAWHHLPIV 
DVHPPDERFE TGWQTSGPAL VGCLNAGGRV LVHCRGGLGR AGTVAARMLV ELDVPAPDAV 
ARVRQARPGA IETADQLNYV LRLQDICNA