| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2766 |
|---|
| Symbol | |
|---|
| ID | 6163624 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3048265 |
|---|
| End bp | 3049323 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641665543 |
|---|
| Product | patatin |
|---|
| Protein accession | YP_001791796 |
|---|
| Protein GI | 171059447 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.104488 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGGAA AGTTCAATCG ACGCCCGCGT CTGAGCCTGG CCTTGCAGGG CGGCGGCGCC
CACGGTGCCT ACACCTGGGG CGTGCTCGAT GCCCTGCTCG AAGCGGATCG CTTCGACTGG
GATGCCGTCA GCGGCACCAG CGCCGGCGCG CTCAACGCGA TCGTGATGGC TGACGGCCTG
GCGCGCAGCG GCCACGGCCC GGGCCCGGCC GCCAACGAGG CCGCCCGCGA GGCGCTGGCG
GCGTTGTGGA GCGAGGTCGG CACCCAGCTG CCCTTCGAGT GGTTCACCGA GGGCAAGGCC
AGCGATCCCG GCCTGGCGCC GGCCGCGCGG GTGGCGCTGC AGTGGACGCA GCTGCTGTCG
CCCTATCAGC TCAACCCGCT GGGGCTCAAC CCGCTGCGCG ACCTGCTGCA GCGGCTGGTC
GATTTCGAGC GGCTGCGCCT GGCCAGCCCG ATCCGGCTCT ACATCGCCGC CACCCAGGTG
CGCACCGGCC GGCTCAAGCT GTTTCGTGAA CACGAGCTGA ACGTCGACGC GGCCCTGGCG
TCCGCGTGCC TGCCGACCAT GCACCACGCC GTCGAGATCG ACGGCGAGGC GTACTGGGAC
GGCGGCTACA GCGCCAACCC GGCCTTGTTC CCGCTGACCG CCACCGGCCA TGCCGACGAC
GTGCTGATCG TCATGCTCAG CCCGCTGGCC TATGCCGAGC CGGGTGGCAA GTCGCCCACC
AGCGTGGCCG AGATCCGCAG CCGCGCCGTC GAGATCGCCT TCAACGCCAC CTTCCAGCGC
GAGGCCGCCT TGCTGGGCAG CGCCTGCGCG GCCGCGCAGC GCGGCAACTG GTGGCCGTCG
GGCGCCCTCG AGCGGCGCCT GCGCGCCTTG CGCTGGCACC TGATCGACGG CCAGGACGCG
CTGGGCCACC TCGCCAGCGA AACCAAGCTG CTGGCGCACA AGCCGTTTCT GGAAAACCTG
CGGGACCTCG GGCGCCACCG CGCGCTGCGC TGGCTGGACG AGGACGGCGC TCGAGTCGGC
AAATCCGCCA CCGTCGACCT GCAGGCGCTG TTCGCCTGA
|
|---|
| Protein sequence | MFGKFNRRPR LSLALQGGGA HGAYTWGVLD ALLEADRFDW DAVSGTSAGA LNAIVMADGL
ARSGHGPGPA ANEAAREALA ALWSEVGTQL PFEWFTEGKA SDPGLAPAAR VALQWTQLLS
PYQLNPLGLN PLRDLLQRLV DFERLRLASP IRLYIAATQV RTGRLKLFRE HELNVDAALA
SACLPTMHHA VEIDGEAYWD GGYSANPALF PLTATGHADD VLIVMLSPLA YAEPGGKSPT
SVAEIRSRAV EIAFNATFQR EAALLGSACA AAQRGNWWPS GALERRLRAL RWHLIDGQDA
LGHLASETKL LAHKPFLENL RDLGRHRALR WLDEDGARVG KSATVDLQAL FA
|
|---|
| |