Gene Lcho_2748 details

Gene Information

• Locus tag: Lcho_2748
• ID: 6163987
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3026315
• End bp: 3027106
• Gene Length: 792 bp
• Protein Length: 263 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 641665525
• Product: hypothetical protein
• Protein accession: YP_001791778
• Protein GI: 171059429

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 0.00566814
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGAAACGCC GGCAAGCCGC ATTCCTCGTC CCCGCCCTGG TCGCCACCGC GGCATTGGGC 
GGCTGCGCAT CGATGGACAA GGGCCACAAG CAGCGCCAGG TGGCTTCGGT GCTGAGCTTC 
CTGTTCCCGG GCACCAAGGA CGGCGCGCCG CCGCCGGCAT CGACCCAGGT GGCCGTCATC 
AAGGTGCCGT TCCGCATCGG CGTGGCGTTC GTGCCGGACG CGGCGCAGTC GGAGTTCCGC 
CTCTCCGAAA CCGAGCGCCA GCAGCTTGCC ACGCGGGTGC GCGAGGCGTT CGCGAACTAC 
CCGTTCATCA GTCACATCGA AGCCGTGCCC TCGCTCTACC TCGAGGCGGG CGGCGGTTTC 
GACAACCTCG ACCGGGTGGC ATCGCTGCTC AACCTCGACG TGGTGGCGCT GATCTCGTAC 
GACCAGGTGC AGCACGCCGA TGCCAGCGGC TGGTCGTTCC TGTACTGGAC CGGCGTGGGC 
GCCTACGTGA TCGAGGGCGA CCGCTTCGAG GTGCTGACCG CCGTCGAATG CACCGTGTTC 
GACGTCCGGA GCCGGCGCCT GCTGATGCGC GCCTCCGGCA CCGCGACCAA CAAGGGCGAG 
GCGACGATGG TCGCGTTCGG CGAAAAGTCC CGCGAGGGAC GCGGCAAGAG CTTCGCCGAG 
GCGATGGACC AGATGATCGG CGCGCTGCAG AAAGAGGTGC AACGCTTCCG CGAAACGGCG 
CCCAGGGATC CGATGATCAA GCTGGTGCTG CCGCCGGGTT ACGACCCGAA GGCCGCCCCG 
GCCGCCCGCT GA 

 

Protein sequence

MKRRQAAFLV PALVATAALG GCASMDKGHK QRQVASVLSF LFPGTKDGAP PPASTQVAVI 
KVPFRIGVAF VPDAAQSEFR LSETERQQLA TRVREAFANY PFISHIEAVP SLYLEAGGGF 
DNLDRVASLL NLDVVALISY DQVQHADASG WSFLYWTGVG AYVIEGDRFE VLTAVECTVF 
DVRSRRLLMR ASGTATNKGE ATMVAFGEKS REGRGKSFAE AMDQMIGALQ KEVQRFRETA 
PRDPMIKLVL PPGYDPKAAP AAR