Gene Lcho_2619 details

Gene Information

• Locus tag: Lcho_2619
• ID: 6162991
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 2869827
• End bp: 2871815
• Gene Length: 1989 bp
• Protein Length: 662 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 641665395
• Product: type II and III secretion system protein
• Protein accession: YP_001791649
• Protein GI: 171059300
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4796] Type II secretory pathway, component HofQ

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 37
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGAACCGAT CCATTCGCCG CCCCCTGACC TGGCTCAGCC TGGCCTGCGT CACCCTGTTG 
TCGGCCTGCG CCGCGCAGCG GGTGCATGAC AACGGTCTCT CCGACGTCGC CAACGGCCGC 
ACCGAACAAG GCCTTCAGCA GCTGCGCGAA GCGGCCGACC TGGAGCCCAG CAACGCCCGC 
TACCGGCTCG ACTACCTGTC CCAGCGCGCC CTCGCCACCC AGCAGCTCAA CAGCCGCGGC 
GACGACGCCC GCCTGGCCGG CAAGGCCGAC GAGGCGCAGC GCCACTACCG CGCGACGCTG 
GCGCTGGACC CGAGCAACGA ACGCGCCCTG CGTGGCCTGC AGATGCTGCA GGACCTGCGC 
CGGGTGGCGG CGGTCAAGCA GCAGGTCGAA GACAGCCTGC AGGCCAAGCT GCCCGATCAG 
GCACTGGAGC AGCTGCGTCG CGCCCAGCGC GAACTGCCGA ACCAGCCCGA GCTGCAGCAG 
CTGGCTCGCC GCATCGAAGA GCAGACCGAA GCCGAGCGGA TCGAGCGCGA GCGCAAGGCC 
GGCCTCGAAG CGGCCTTCAA GCGGCCGGTC ACGCTGCAGT TCCGCGACGC CAACGTGAAG 
ATGGTGTTCG AGGCCCTCTC GCGCACCGCC AACATCAACA TCATCCTCGA CCGCGACGTG 
CGCGCCGACC TGCGCACCAC GATCTACGTG CAGAACGCGT CGGTCGAGGA CACGCTCGAC 
CTGATCCTGC TGCAGAACCA GCTCGACCGC CGGGTGCTCA ACGGCAACAC GATCTTCGTC 
TACCCGGCCA CCCCGGCCAA GCAGCGCGAG TACAACGAGC TGAAGGTGCG CACCTTCCAG 
CTCAGCAACA TCGAGGCCGC GCAGATGGCC ACGATCATCA AGACGATGCT CAAGACGCGC 
GACGTCGTCA CCGATGCCAA GAGCAACTCG CTGGTGATGC GCGACACCGC AGCCTCCATC 
GCGGTGGCCG AGAAACTGAT CGCCGCCAAC GACGTGCCGG ATCCCGAGGT GGTGCTCGAG 
GTGCAGGTGC TCGAGGTGTC GTCCGACCGG CTCTCCAACA TCGGCCTGCG TTTCCCGGAC 
GCCTTCACCG TGGGCACGCC CAGCACCGCC ACCACGGTGG GCGACCTGCG CGCGCTCACC 
AGCGACAACC TGACCGCCAG CTCGCTGAGC CTGGGCCTGA ACCTGCTGCT GCAGGACACC 
GACACCAACA TCCTCGCCAG CCCGCGCATC CGCGCACGCA ACAAGGAAAA GGCCCGCATC 
CTGGTGGGCG ACAAGGTGCC GGTGATCACC AACCTGATCA CGCCGCAGCA GAGCGGCCAG 
AGCTCGGTCA TCACGGGCTC GATCCAGTAC GTCGACGTCG GCATCAAGCT CGAGGTCGAG 
CCGCAGGTCT ATGCCGACGG CGATGTCGGC ATCAAGGTCA ACCTCGAGGT CAGCAACATC 
GCCAAGACCA TCACCACCTC GTCGGGCGTG GCCTACCAGA TCGGCACCCG CAACGCGACC 
ACCGCGCTGC GCCTGCACGA CGGCGAGACG CAGATGATGG CCGGCCTGAT CAACGACCAG 
GACCGCAGCA CCGCCAGCAA GCTGCCCGGG CTGGGCCAGC TGCCGGTGAT CGGCCGGCTC 
TTCACGTCGA CCAACGCGAG CGGTGGCAAG AGCGAGATCG TGCTGTCGAT CACGCCGCGC 
ATCGTGCGGC CGCAGTCGAC CCCCGAGGCG CGCCTGGGCG AGGTCTGGTC GGGCACCGAG 
AGTTCGGTGC GGGATCGGCC CCTGCGCATC GAACCGGTCG GTGCCATCCG CACCGGCACG 
TCGGGCGCGG CCGGTGCACC AACCGGTGGC GCGGCCGGCC AGCCTGCGCG TGTCCGACCG 
AGCGCGCCGG GCCGCCTGGG TCTGCCGGGA CGCCCCGCCA ACGCCCCGGT CAACACGCCG 
GCCCAGCCCG AAGCGGCCGC GCCGGGCAAC GACGTGGATG CCGAGGAGCC GGCGACGCCG 
GAGAACTGA 

 

Protein sequence

MNRSIRRPLT WLSLACVTLL SACAAQRVHD NGLSDVANGR TEQGLQQLRE AADLEPSNAR 
YRLDYLSQRA LATQQLNSRG DDARLAGKAD EAQRHYRATL ALDPSNERAL RGLQMLQDLR 
RVAAVKQQVE DSLQAKLPDQ ALEQLRRAQR ELPNQPELQQ LARRIEEQTE AERIERERKA 
GLEAAFKRPV TLQFRDANVK MVFEALSRTA NINIILDRDV RADLRTTIYV QNASVEDTLD 
LILLQNQLDR RVLNGNTIFV YPATPAKQRE YNELKVRTFQ LSNIEAAQMA TIIKTMLKTR 
DVVTDAKSNS LVMRDTAASI AVAEKLIAAN DVPDPEVVLE VQVLEVSSDR LSNIGLRFPD 
AFTVGTPSTA TTVGDLRALT SDNLTASSLS LGLNLLLQDT DTNILASPRI RARNKEKARI 
LVGDKVPVIT NLITPQQSGQ SSVITGSIQY VDVGIKLEVE PQVYADGDVG IKVNLEVSNI 
AKTITTSSGV AYQIGTRNAT TALRLHDGET QMMAGLINDQ DRSTASKLPG LGQLPVIGRL 
FTSTNASGGK SEIVLSITPR IVRPQSTPEA RLGEVWSGTE SSVRDRPLRI EPVGAIRTGT 
SGAAGAPTGG AAGQPARVRP SAPGRLGLPG RPANAPVNTP AQPEAAAPGN DVDAEEPATP 
EN