| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2597 |
|---|
| Symbol | |
|---|
| ID | 6163510 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2843584 |
|---|
| End bp | 2844690 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641665373 |
|---|
| Product | permease YjgP/YjgQ family protein |
|---|
| Protein accession | YP_001791627 |
|---|
| Protein GI | 171059278 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0795] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.10146 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACACGA TCCGTCGACT GCTCTACCGC GAGATCCTCG GCGCCACCGG CTACGTGATG
GTGGCGTTCC TGGGCCTGTT CTTCTTCATC GACTTCATGG CCGAGCTCGA GAACATCGGC
CAGCACGGCT ACGGCGCGGC GCAGGCGGCG CTGGCCTGCC TGCTGCAGGT GCCCGGCCAC
GTCTACGAAC TCGCGCCGAT CGCGGTGCTG ATCGGTGCGA TCTACGCGCT GGCGAGGCTG
GCGCATTCGT CGGAGTTCAC CATCTTGCGC ACCGGCGGGC TCGGCCCCGG GCTGGCGCTG
CTGCTGCTCA CCTGGCTGGG CCTGGGGTTT GCCGCCATCA CCTTCGTGAT CGGCGACTTC
GTCGCGCCCT GGTGCGACAC CCAGGCGACC CTGCTGCAGG CGCGCGCCAG CGGCAACCTG
AGCGTGGCCA GCGGCGGCGC CTGGCTCAAG GACAGCGCCA GCGCGGCCGA TGGCGAGCAT
CGCTACACCG TCAACTTCGC CGCCGCTCGC AGCGACGGCG AACTGGAGAA GGTGCGCATC
TTCGAGTTCG GCCCCAAGGG CGCCCTGATC ACCCGCACCA CGGCCGAACG CGCGGTCATC
GGCGACGACG GCACCTGGCA GCTCACCGAC GTGCGGATCT CGCACTGGAC CAGCGACCAC
ACGCCGCGCC TCGATGCCGA CGAGAAGCTC GCCAGCCACG TCTGGCAATC GGGCCTGACG
CGCAACGTGG TGGCCGCCGC GGTGCTGCCG CTGCGCACCA TGTCGACGCT GGCGCTCTAC
AACTACATGA CCCACCTGGC CGATCACGAA CAGGCCGCGC AGCGTTACGA GATCCAGTTC
TGGAAGAAGG CGCTCTACCC CTTCGCCTGC CTCGTGATGA TGGGCCTGGC GCTGCCGTTC
GCCTACCTGC ACGGGCGCAG CGGCGGCATC GGCCTGATGG TGTTCGGCGG CATCATGCTG
GGCATCGGCT TCGTGCTGCT CAACAACCTG TCGAGCCACC TCGGGCTGCT GCAGAACTGG
ACGCCCTGGC TCGCCGCCAG CGCGCCGAGC GCGATCTTCC TCCTCCTGTC GCTGGCCGCT
TTCAGCTGGC TGGTGCGCTA CCGCTAG
|
|---|
| Protein sequence | MHTIRRLLYR EILGATGYVM VAFLGLFFFI DFMAELENIG QHGYGAAQAA LACLLQVPGH
VYELAPIAVL IGAIYALARL AHSSEFTILR TGGLGPGLAL LLLTWLGLGF AAITFVIGDF
VAPWCDTQAT LLQARASGNL SVASGGAWLK DSASAADGEH RYTVNFAAAR SDGELEKVRI
FEFGPKGALI TRTTAERAVI GDDGTWQLTD VRISHWTSDH TPRLDADEKL ASHVWQSGLT
RNVVAAAVLP LRTMSTLALY NYMTHLADHE QAAQRYEIQF WKKALYPFAC LVMMGLALPF
AYLHGRSGGI GLMVFGGIML GIGFVLLNNL SSHLGLLQNW TPWLAASAPS AIFLLLSLAA
FSWLVRYR
|
|---|
| |