| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2580 |
|---|
| Symbol | |
|---|
| ID | 6162257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2818194 |
|---|
| End bp | 2819198 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641665355 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001791610 |
|---|
| Protein GI | 171059261 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.000261921 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAGA ATCGTCGCCT GGCACAACAG CAGGCGCACC ACGCCAAGCA GGAAGATGCA
CATCATGCGT CGGGTCGCAC GATCCACTCA ATCCACGTCA TGAAGCACAC GAAGTTGCAG
GCCTGGGCGC TGCTGGTGCT GATCGGCACG CTGATCGCCA TGGGAATGGT CGTCGGCACC
GGCGGCGGCC CGTCGGGCTC GCACGCCGAC GACCGGCCGC TGCGGGTCGG CTACGCGCTG
GAGGCGCCGT ACGCCTATCT CGACGGCCGC GGACGGGTCG GCGGCGAATC GCCCGAGGTG
CTGCGCGCGC TGTTGCGCCG CATGGGCGGG CCCGAGCCGC AGTGGGTGCA CCAGGAGTTC
TCGACGCTGA TCCACGAACT CGAGATCGGC CGCATCGACG TCATCGCCGC CGGCCTGTTC
ATCACCGCCG AGCGCAGCCA GCGGGTCGCC TTCACCCGAC CGACCGTGGC GGTGCGCACC
GGCCTGCTGG TGGCGGCCGG CAACCCGCGC AAGCTGTCGC GCCTGCAGGA TCTGGCCGGG
CAGGATCGCC TGCGGCTGGC CGTGATCGAA GGCGCCGTCG AGGCCCGTCA GGCGCAGGCC
AGCGGCGTGT CGAGCCGGCA GCTGCTGCGG GTGCCGGACG CGCAGACCGG CATCGCCGCC
GTGCGCACCG GTCGCGCCGC GGCGATGGCG CTGTCGGCGC CGTCGTTGCG CTGGATGCTC
GGCCAGGGTG ACGGCCGCGG GCTCGAGGTG CTGGATCTGG CGGACGATCC GGCGACCGCC
GGCATCGGCT ATCCGGCCTT CGCCTGGCGC CTCGACGACC CCCGTCGCGA ACGCTTCGAC
CGCCAGCTGG CGGCGTTCGT CGGCAGCTCG GAGCACCTCG AGATCGAGCT GCGCCACGGC
ATGTCGACGG CCGATGTCGA ACTGGCGCGG CGCTGGAAAC CCGGCTCGCA GGCCGGGGCG
CCGGCGGACC GCCGCCTCGT CCACGTCGCC GGGGCGGGAT CGTGA
|
|---|
| Protein sequence | MNQNRRLAQQ QAHHAKQEDA HHASGRTIHS IHVMKHTKLQ AWALLVLIGT LIAMGMVVGT
GGGPSGSHAD DRPLRVGYAL EAPYAYLDGR GRVGGESPEV LRALLRRMGG PEPQWVHQEF
STLIHELEIG RIDVIAAGLF ITAERSQRVA FTRPTVAVRT GLLVAAGNPR KLSRLQDLAG
QDRLRLAVIE GAVEARQAQA SGVSSRQLLR VPDAQTGIAA VRTGRAAAMA LSAPSLRWML
GQGDGRGLEV LDLADDPATA GIGYPAFAWR LDDPRRERFD RQLAAFVGSS EHLEIELRHG
MSTADVELAR RWKPGSQAGA PADRRLVHVA GAGS
|
|---|
| |