| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2548 |
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| Symbol | |
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| ID | 6162170 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2781333 |
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| End bp | 2782163 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641665323 |
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| Product | squalene synthase HpnC |
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| Protein accession | YP_001791578 |
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| Protein GI | 171059229 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03464] squalene synthase HpnC |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.0126311 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTCG ACCACTACGA AAACTTCCCC GTCGCGTCGA TCCTGTGCCC GCCGGCCCTG
CGCCCGGCGG TGACCTCGAT CTACTGGTAC GCCCGCACGG CAGACGACCT GGCCGACGAG
GGCGATGTGC CCGTCGAGCA GCGTCTGGCC GACCTGGCGC AATACCGCAG CGACCTGCAC
GCCGCCGCCG GCGACCGGCG CGGTTCGGGC CGCTGGGCCG GTGTCTTCAC GCCACTGGCC
GCCACGCTGG CGCAACACGC CCTGCCGCTG CAACTGCTGG AAGACCTGCT CGACGCCTTC
GAGCTCGACC TGCACCAGCC CCGCCATGCC GACCGCGATT CGCTGCTGGC GTATTGCCGC
TGCTCGGCCA ACCCGATCGG CCGGCTGCTG CTGCACCTGT ACGGCGTGCA CGAGGCCGGC
GCGCTGCGCC AGTCGGACGC CATCTGCACG GCGCTGCAGC TGATCAACTT CTGGCAGGAC
GTCAGCGTCG ACCTGCCGCG CGGGCGGCTC TACCTGCCGC TGGCAGACTG CGAGCGCCAC
GGCCTGGACG CACAGGCCCT GCTCGCCAGC GCCAGCGCGC GCGCCGATGC GCGCCGGTGC
GCCCCGCTGG TGGCCGAGCT CGCAGCCTGG ACGCGCGCCA TGATGACCGA CGGCGCCGAC
CTGGTTCACC ACCTGCCCGG CCGGCTCGGC TGGGAGCTGC GGCTGGTGGT GCAAGGCGGG
CTGCGCATCC TCGACAAGGT CGAGGCGCTG CAAGGTGGCG TGTTCACGCA ACGCCCGAAG
CTGCACGCGT GGAACGGCCC GCGCCTGCTG TGGCGCGCCA TCAACATGTG A
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| Protein sequence | MSVDHYENFP VASILCPPAL RPAVTSIYWY ARTADDLADE GDVPVEQRLA DLAQYRSDLH
AAAGDRRGSG RWAGVFTPLA ATLAQHALPL QLLEDLLDAF ELDLHQPRHA DRDSLLAYCR
CSANPIGRLL LHLYGVHEAG ALRQSDAICT ALQLINFWQD VSVDLPRGRL YLPLADCERH
GLDAQALLAS ASARADARRC APLVAELAAW TRAMMTDGAD LVHHLPGRLG WELRLVVQGG
LRILDKVEAL QGGVFTQRPK LHAWNGPRLL WRAINM
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