| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2547 |
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| Symbol | |
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| ID | 6162169 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2780010 |
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| End bp | 2781191 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641665322 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001791577 |
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| Protein GI | 171059228 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0278745 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCTGGT GCCTCATGCG CTCACGTTCC CTCGCTCTTC TGCCGTCGCT GCTCGTCGTG
GTCCTGCTTG CCGCCTGCTC GAAACCCGAG CCGGCACCCG AGCCGGTGCG GGCCGTGCGC
ACCCGGGTGG TCGACGGCCA GACGGCGGTC GGCACGCTCG AATACGCGGC CGAGGTGAAG
GCGCGCACCG AGTCGCGGCT GAGTTTCCGG GTCGGCGGCA AGCTGCTGGC GCGGCCGGTC
GAGCTGGGCC AGTCGGTGCG GCGCGGGCAG TTGCTGGGCC AGCTCGATGT CACCGATCTC
GGACTCGGCG CCGAGGCGGC GCAGGCCGCT CTGCGCGCCG CCCAGGTCAA TCTGGATCAG
GCGACGGCCG ACCTCAAGCG CTTCGAGGAA TTGAAGGCGC AGGGTTTCAT CAGCGCCGCC
GATCTGGAGC GGCGCGCGTC GACCCAGAAG GCGGCCCAGG CGACCTTCGA GCAGGCCCGC
GCGCAGGCCG GCGTGCAGGG CAACCAGGCG CAGTACAGCC GGCTGGTGGC CGACGTGGCG
GGGGTGGTCA CGGCGGTCGA GGCCGAGCCG GGCGCGGTGC TGTCGTCGGG CACGCCGGTG
CTCAAGCTGG CGCACGACGG CCCGCGCGAC GTGGTGTTCC AGGTGCCCGA GGACCGCATC
GCGGTGGTGC GCGCGTTGCT GGGCAAGGCC GGCGCGCTGC AGGTGGAGTT GTGGGGCAGC
AGCGCCGGCA GCGCGCCGCT GGCCGCGACG GTGCGCGAGG TGTCGGCCGC GGCCGATCCG
GTCGGGCGCA CCTTCCAGGT CAAGGCCGAT CTGGGCCGTG CCGAGGTGCG GCTGGGCCAG
ACCGCCACCG TGCGCCTGCA AGGCGCGCCG CGCCAGGACG TGCAGCGCCT GCCGCTGGCG
GCGGTCAGCG AGGCGGGCGG CCGCAGCGTG GTCTGGCTGC TCGATGCGGC CACGATGACG
GTGCGCCAGC AGCCGATCGA GGTGGCGGGC GCCGAGGGTA CGCAGGTGCT GGTGGCGCAG
GGGCTGGCCG CGGGTCAGGA GGTGGTGGTG GCCGGCGTGC ATGTGCTGAC GCCGGGCCAG
AAGGTCACGC GTTATGTCGA GCCGGTGCGC GGCAATGGGC CTGCGGTGGC TCCCGCGGCA
TCGCCAGCCG TGGTGCCGGT GGCCTCGGCC GCGTCGCGCT GA
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| Protein sequence | MVWCLMRSRS LALLPSLLVV VLLAACSKPE PAPEPVRAVR TRVVDGQTAV GTLEYAAEVK
ARTESRLSFR VGGKLLARPV ELGQSVRRGQ LLGQLDVTDL GLGAEAAQAA LRAAQVNLDQ
ATADLKRFEE LKAQGFISAA DLERRASTQK AAQATFEQAR AQAGVQGNQA QYSRLVADVA
GVVTAVEAEP GAVLSSGTPV LKLAHDGPRD VVFQVPEDRI AVVRALLGKA GALQVELWGS
SAGSAPLAAT VREVSAAADP VGRTFQVKAD LGRAEVRLGQ TATVRLQGAP RQDVQRLPLA
AVSEAGGRSV VWLLDAATMT VRQQPIEVAG AEGTQVLVAQ GLAAGQEVVV AGVHVLTPGQ
KVTRYVEPVR GNGPAVAPAA SPAVVPVASA ASR
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