| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2538 |
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| Symbol | |
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| ID | 6163169 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2765370 |
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| End bp | 2767160 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641665308 |
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| Product | acyl-CoA dehydrogenase domain-containing protein |
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| Protein accession | YP_001791568 |
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| Protein GI | 171059219 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1960] Acyl-CoA dehydrogenases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.000216055 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACCTACC GCGCCCCGCT CAAAGACCTG CTTTTCGACA TCAAGGAGCT TGCCGGCATC
GATGCGCTGA CCGCCTTGCC TGGCCTCGAA GACGCCGGCT ACGACACCGC CGTGGCCGTG
CTCGAAGAAT GCGCCAAGCT CAACGAGCAG GTGATCGCGC CGCTCAACCG CGCCGGCGAT
ATCGCGCCGA GCTGGTTCAA GGACGGTGTG GTGACCACCA CCGCCGGCTT CAAGGAAGCC
TTCCGTGCGT TTGCCGAGGG CGGCTGGCAA GGCCTGCATC ACCCGGACGA GTTCGGCGGC
CAGGGCTTGC CCAAGCTGAT CCACGCGGCC TGCATCGAGA TGATCAACAG CGCCAACCTG
AGCTTCGCGC TGTGCCCGCT GCTGACCGAT GGTGCGATCG AGGCCCTGCT GACCGCCGGC
AGCGACGCCC AGCGCACCAC CTACCTGCCC AGGATGATCG ACGGCAGCTG GACCGGCACG
ATGAACCTGA CCGAGCCGCA GGCCGGCTCC GATCTGGCCG CGGTGCGCAC CCGCGCCGAG
CCGCAGCCCG ACGGCACGTA CAAGATCTTC GGCACCAAGA TCTTCATCAC CTACGGCGAA
CACGACATGG CCGAGAACAT CGTGCATCTC GTGCTCGCGC GGGTGGTCGG TGCGCCCGAG
GGTGTCAAGG GCATCAGCCT GTTCGTCGTG CCCAAGTTCA TGGTGAACGC CGACGGCAGC
CTGGGCGAGC GCAACGACGT GCACTGCGTC AGCATCGAGC ACAAGCTCGG CATCAAGGCG
AGCCCGACCG CGGTGCTGCA GTTCGGCGAC CACGGCGGCG CGGTCGGCCA GTTGATCGGC
CAGGAGAACC GCGGCCTCGA GTACATGTTC ATCATGATGA ACGCGGCGCG CTTCGCCGTC
GGCGTGCAGG GCATCGCGGT GGCCGAGATG GCGTACCAGA AGGCGGTGGC CTACGCGCGC
GATCGTGTGC AGTCGCGCCC GGTCGACGGC TCGGTGGCGG GTTCGGCGGC CATCATCCAT
CACCCGGACG TGCGCCGCAT GCTCAGCACG ATGCGCGCGT ATGCCGAAGG TTGCCGCGCG
CTCGCGCTGG TGTCCGCCGC TGCCTACGAC GCCTCGCACT CCCACCCGGA CCCCGAGGCG
CGGCAGCAGA ACCAGGCCTT CTACGAATTC ATGGTGCCGC TGATCAAGGG CTTCAGCACC
GAGATGAGTC TCGAGGTCAC GTCGCTGGGC GTGCAGGTGC ATGGCGGCAT GGGCTTCATC
GAGGAGACCG GCGCGGCGCA GTTCTACCGT GATGCCAAGA TCCTGACGAT CTACGAGGGC
ACCACCGCGA TCCAGGCCAA CGACCTGGTC GGTCGCAAGA CCGCGCGCGA TGGCGGCCGC
ACCGCGCGTG CGATCGCCGC GCAGATCGAG CTGACCGAGA TCGCGCTGGC CTCGCACGAC
AGCGCCGCCG CGCAAGCCTT TGCCAAGCGG CTGAGCGCCG CGCGACTGGC GTTCCTCGAC
GTGGTCACGT TTGTCGTCGC TGGCACCAAG TCCGACCCGA ACGCGGTCTT CGCCGGCTCG
GTGCCCTACT TGATGCTGGC CGGCAACCTG ATGGCCGGCT GGCAGATGGG CCGCGCGCTG
CTGGCCGCCG AAGACAGCCT CAACGAGGGC GAGGACACCG CCTTCATGCA GGCCAAGATC
GCCACCGCGC GCTTCTATGC CGACCACATC CTGACGCGGG TGCCCGGCCT GCGCGACAGC
ATCGTCGAAG GTGGCGAGTC CGCCTGCGCC CTGGCGCTGG AGGCATTCTG A
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| Protein sequence | MTYRAPLKDL LFDIKELAGI DALTALPGLE DAGYDTAVAV LEECAKLNEQ VIAPLNRAGD
IAPSWFKDGV VTTTAGFKEA FRAFAEGGWQ GLHHPDEFGG QGLPKLIHAA CIEMINSANL
SFALCPLLTD GAIEALLTAG SDAQRTTYLP RMIDGSWTGT MNLTEPQAGS DLAAVRTRAE
PQPDGTYKIF GTKIFITYGE HDMAENIVHL VLARVVGAPE GVKGISLFVV PKFMVNADGS
LGERNDVHCV SIEHKLGIKA SPTAVLQFGD HGGAVGQLIG QENRGLEYMF IMMNAARFAV
GVQGIAVAEM AYQKAVAYAR DRVQSRPVDG SVAGSAAIIH HPDVRRMLST MRAYAEGCRA
LALVSAAAYD ASHSHPDPEA RQQNQAFYEF MVPLIKGFST EMSLEVTSLG VQVHGGMGFI
EETGAAQFYR DAKILTIYEG TTAIQANDLV GRKTARDGGR TARAIAAQIE LTEIALASHD
SAAAQAFAKR LSAARLAFLD VVTFVVAGTK SDPNAVFAGS VPYLMLAGNL MAGWQMGRAL
LAAEDSLNEG EDTAFMQAKI ATARFYADHI LTRVPGLRDS IVEGGESACA LALEAF
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