| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2517 |
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| Symbol | |
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| ID | 6161470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2747788 |
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| End bp | 2749002 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641665287 |
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| Product | twitching motility protein |
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| Protein accession | YP_001791547 |
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| Protein GI | 171059198 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0242978 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAGA ATCTGGAGCG CATCCTTCGG CTGATGGCCG AAAAGCGCGC CTCCGACGTG
TTCCTGTCGG CCAACATGCC GGTGCTGATC AAGATCCACG GTCAGATCAT GCAGCTGACC
CAGGATCAGC TGGCGCCCAA CCAGACACGC CAGCTGCTGG CCGAGATGCT GACCCACACC
CAGCTCGAGG ACCTGGATGA AACCGGCGAG CTCAACGTCG GCCTGCAGCT GCCCGGCGTC
GGCTCGTTCC GGCTGTCGGC CTTCAAGCAG CGCGGCACAA TCGCGGCGGT GTTCCGCTGC
ATGCCCACCG AGGTGCCGAC GATCGAGTCG CTCAACCTGC CCGACAGCCT GCCGGCGATC
GCGCTGGCGC GGCGCGGCCT GGTGCTGATG GTGGGCGCCA CCGGCTCCGG CAAGAGCACC
ACGCTGGCGT CGATGATCCA GCAGCGCAAC CGCACGGTGG CCGGGCACAT CCTGACGATC
GAGGATCCGA TCGAGTTCCT GTTCACCAAC TACAAGTCGG TGGTGAACCA GCGCGAGGTC
GGCCGCGACG TGCAGTCGCT GCAGATCGGC CTGAAGAACG CGATGCGCCA GGCGCCCGAC
TGCATCTTCA TCGGCGAGAT CCGCGACCGC GAGACCATGA GCGCGGCGCT GTCGTATGCA
CTGTCGGGCC ACCTGGTGCT GTCGACGCTG CACGCCAACA ACAGCCACCA CGCGCTCAAC
CGCATCCTGT CGTTCTACAC GCCCGAAGCA CGGCCGGCGC TGATGTCGGA CCTGGCGTCC
GGGCTGAAGG CCATCGTCTC GCAGCGCCTG CTGCGCTCGA CCCGCGGCGG CCGCATCCCT
GCCTGCGAGG TGCTGCTCAA CACCCAGCTG ATCGCCGAGC TGATCGACCA GGGCAACTTC
GGCGGCGTCA AGGAGGCGAT GGAGCGCTCG ATCGCCGAAG GCTCGCAGAC CTTCGAGCAG
GACTTGGCGC GGCTGATCTC CGAAGGCCTG GTGACGCGCG AGGAAGGCCT GAGCCATTCC
GATTCGCCCA CCAACCTGCT GTGGCGGCTG CAGAACGAGG CGCACGGCGG CAAACGCCAG
CCCGAGCCCG AACCCGAGGC CGAACCCGGC CCGTCGTTCA CCGAGATCAC GCTCGACGTG
CATTCGGCGC AAGCCAACCG CGGCCGTCGC AACCCGCTGC TGCGGCCGTT GCCGACCAAC
ACCAAGTCGA ACTGA
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| Protein sequence | MTKNLERILR LMAEKRASDV FLSANMPVLI KIHGQIMQLT QDQLAPNQTR QLLAEMLTHT
QLEDLDETGE LNVGLQLPGV GSFRLSAFKQ RGTIAAVFRC MPTEVPTIES LNLPDSLPAI
ALARRGLVLM VGATGSGKST TLASMIQQRN RTVAGHILTI EDPIEFLFTN YKSVVNQREV
GRDVQSLQIG LKNAMRQAPD CIFIGEIRDR ETMSAALSYA LSGHLVLSTL HANNSHHALN
RILSFYTPEA RPALMSDLAS GLKAIVSQRL LRSTRGGRIP ACEVLLNTQL IAELIDQGNF
GGVKEAMERS IAEGSQTFEQ DLARLISEGL VTREEGLSHS DSPTNLLWRL QNEAHGGKRQ
PEPEPEAEPG PSFTEITLDV HSAQANRGRR NPLLRPLPTN TKSN
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