| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2473 |
|---|
| Symbol | |
|---|
| ID | 6161872 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 2691834 |
|---|
| End bp | 2693030 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641665243 |
|---|
| Product | cobalamin B12-binding domain-containing protein |
|---|
| Protein accession | YP_001791503 |
|---|
| Protein GI | 171059154 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5012] Predicted cobalamin binding protein |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.000000169304 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCATGGAT GGCGGTGCCA GCGCGAACAA GCCAGTGACG GAGTCGATGC CGGGTCCACG
ATGGCCGGGG CCGGGGCGGT GTTGCGCGAA TTCGAGCCGT GTGCGGACGA GGCAGCGATG
AACGACACGC TCGTCCTGTC TGCCGGCCAC CAGCTGCGCG ACCAGGCCGG CGCACTGGCC
GACGCGGTGG TCGTGTGCGA GTTCGCCCGC TATCCCCGCT TGCGCGCGCG TTACGGCGCC
GCCGGCCGCG CCAAGGCGCG CCGGGACGCG GGCTACCATT TCGCGTATCT CGCCGATGCC
GTCGACGCCG GCAGCCCGGC GCTCTTCAAC GACTACATCG GCTGGGTCAA GGTGCTGCTG
GCGCAGCGCA ACGTGCGCAG CGAGGACCTC GATCACCACC TCGCCTGCAT GGCCGACGTG
TTGCGCGAGC AGATGCCGCC CCCGGTGGCC GACCCCGCCA TCGCGATGAT CGACGGCGCG
CGCGCCGCGC TGCCGACCCT GCCGAGCACC AGCGCCAGCT TCATCGACCC CGGCGAGCGC
CTGGCACCGC TGGCGCGCGA GTACGTTCAC ACGCTGCTGG GCGGCTACCG CAAGGCAGCG
GGCCGGCTGG TGTTCGACGC CGCCGAACGC GGCGAGTCCG TCCGAGATCT GTACCTGCAG
GTCTTCCAGC CGGCGCTGCG GGAGGTCGGC CTGCTGTGGC AGATGAAGAA GATCAGCGTC
GCGCAGGAGC ATTTCTGCAG TGCCGCTACC CAGGTCGTGA TGTCGCAGCT GCTGCCGCGG
GCAATCACCG ACACGCGCGG CGGGCACCGC GTCGTGGTCG TCTGCATCAG CGGCGATCTG
CACGAGGTCG GCGCGCGCAT GGTGGGCGAT TTCTTCGAGA TGGCCGGCTG GGACGCCTAT
TACTGCGGCG CCAGCACGCC GCACGACGCC GTCGTGCAGG CGCTGGCCGA GCGTGCGGCC
GACGTGCTGG CCGTCTCGGC GACGATGGGC TGCCACCTGC ACGGGGTGAA GGAGCTGATC
GAGCGTGTCC GCGCCGATCC GCGCTGTGCC CGGGTGCGTG TCATGGTCGG CGGCCCGCCG
TTCACCGTCG ACCCGGCGCT GTGCCGCGCG GTCGGGGCGG ATGGCACCGC GTCCGATGCC
GAGGCGGCGG TGGCGCTCGC CGGCCACTGG CTGGCACAGT CCGCACCCGC GCCTTGA
|
|---|
| Protein sequence | MHGWRCQREQ ASDGVDAGST MAGAGAVLRE FEPCADEAAM NDTLVLSAGH QLRDQAGALA
DAVVVCEFAR YPRLRARYGA AGRAKARRDA GYHFAYLADA VDAGSPALFN DYIGWVKVLL
AQRNVRSEDL DHHLACMADV LREQMPPPVA DPAIAMIDGA RAALPTLPST SASFIDPGER
LAPLAREYVH TLLGGYRKAA GRLVFDAAER GESVRDLYLQ VFQPALREVG LLWQMKKISV
AQEHFCSAAT QVVMSQLLPR AITDTRGGHR VVVVCISGDL HEVGARMVGD FFEMAGWDAY
YCGASTPHDA VVQALAERAA DVLAVSATMG CHLHGVKELI ERVRADPRCA RVRVMVGGPP
FTVDPALCRA VGADGTASDA EAAVALAGHW LAQSAPAP
|
|---|
| |