| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2425 |
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| Symbol | |
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| ID | 6164134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2633272 |
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| End bp | 2634069 |
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| Gene Length | 798 bp |
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| Protein Length | 265 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641665195 |
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| Product | shikimate dehydrogenase |
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| Protein accession | YP_001791455 |
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| Protein GI | 171059106 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.084211 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTGGATT CCTATAGCGG CGCCACCCGC GTCATCTTCA TCGTCGGCGA CCCGATCGCG
CAGGTGAAGT CACCCGCCGG CGTCACGCGG ATGCTGCGCG AACGCGGCGC CGATGCGATC
GTGGTGCCGG CGCACGTGGC GCCCGACGAC CTGGCCGATT TCATGCGCAC GACGCAACGC
ATGCGCAACG TCGACGCGCT GATCGTCACG GTACCGCACA AATTCGCCGT CGCCGACCTG
TGCGCCAGCG TGTCGGCGCG CTCGCGCTCG ATCGGCGCGG TCAACGTGAT GCGCCGCGAT
GCCAGCGGCG GCTGGTTCGG CGACATGTGC GACGGCGAGG GCTACGTGGC CGCGCTGCGC
CTGGCCGGCT GCGATCCGGC CGGGCGGCGC GCCCTGCTGG TCGGCGCCGG CGGGGCGGGC
TCGGCGATCG CGCACGCGCT GGTCGATGCG GGCGTGGTGT CGCTGGCGTT GCACGAGGCC
GACGTGGCGC GCCGCGACAG CCTGCAGCGC AAGCTCGAGG CCTACGGCGC GGTGCCGATC
TCGGTCGGCT CGGCCGACCC GAGCGGCCAC GACCTCGTCA TCAACGCCAC GCCGATGGGC
ATGCGGCCCG ACGATCCGCT GCCGATCGAG GTCGACAAGC TCGGCCCGCA GACCTTCGTC
GGCGACGTCG TCACCGTGCC CGCGGTGCCG GCGCTGCTGG AGGCCGCCCG CGCCCGCAGC
TGCGCCACGA TGACCGGCAC GCAGATGTTC GAGCGCGTGC GCGACCGCAT GGTCGAGTTC
CTGCTGGCCA AGCCCTGA
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| Protein sequence | MLDSYSGATR VIFIVGDPIA QVKSPAGVTR MLRERGADAI VVPAHVAPDD LADFMRTTQR
MRNVDALIVT VPHKFAVADL CASVSARSRS IGAVNVMRRD ASGGWFGDMC DGEGYVAALR
LAGCDPAGRR ALLVGAGGAG SAIAHALVDA GVVSLALHEA DVARRDSLQR KLEAYGAVPI
SVGSADPSGH DLVINATPMG MRPDDPLPIE VDKLGPQTFV GDVVTVPAVP ALLEAARARS
CATMTGTQMF ERVRDRMVEF LLAKP
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