Gene Lcho_2317 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2317 
Symbol 
ID6161938 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp2516370 
End bp2517422 
Gene Length1053 bp 
Protein Length350 aa 
Translation table11 
GC content70% 
IMG OID641665086 
Productvon Willebrand factor type A 
Protein accessionYP_001791347 
Protein GI171058998 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1240] Mg-chelatase subunit ChlD 
TIGRFAM ID[TIGR02226] N-terminal double-transmembrane domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones88 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCTGA CCGCGATCCC GCTGAGCTTC CTGTGGCCGA GCCTGCTGTG GGCGCTCGGC 
CTGCTGCCGC TGCTCGTGCT GCTCTATGTC TGGCTGCTGC ACCGGCGCAA GCGTCAGGTG 
GTGCCTTACG CCAGCCTCGG CCTGATCAAG CAGGCGGTCG GACGCGGCGG CTCGTGGCGG 
CGCCATGTGC CGCCGATCCT GCTGGCCCTG GCACTGGCCA GCCTGCTGCT GGCGCTGGCT 
CGGCCGGTGG CGACGCTGAC GCTGCCGCTG CGCGACCAGA CCCTGCTGCT GGCGATGGAC 
GTGTCCGGCA GCATGCGAGC CACCGATGTC GAGCCCAACC GGCTGGTGGC TTCGCAGGTG 
GCGGCGAAGA ATTTCGTCAA GGATCTGCCA CGCCATGTGC GCGTCGGCGT GGTCAGCTTT 
GCCGGCACCG CCGCGGTGGT GCAGGCACCC ACCCACAGCC GCGACGACGT CTTCGCGGCG 
ATCGACCGCT TCCAGCTGCA GCGCGGCACC GCCATCGGCA GCGGCATCGT GCTGAGCCTG 
GCGACGCTGT TCCCGGAGGC CGGCATCGAT CTGAGCGACA TCACCGGCGA GCGCCGCATG 
CCCAAGGGCA TCGGCGAGAG CGACAAGCAG GACGACTTCA AGCCGGTGGC GCCGGGCAGC 
TACGGCTCGG CGGCCGTCAT CTTGCTGACC GACGGCCAGC GCACCACCGG CCCCGACCCG 
ATGGACGCCG CCAAGATGGC GGCCGACCGC GGCGTCAAGG TCTACACCGT CGGCTTCGGC 
ACCACCAGCG GCGAGATCAT CGGCTTCGAG GGCTGGAGCA TGCGGGTGCG GCTCGACGAA 
GCCACCCTGA AGAACATCGC CAACCTGACC CAGGCCGAAT ACTTCTACGC CGGCAGCGCC 
ACCGACCTGC AGAAGGTCTA TGACACCCTC AGCAGCCGGC TGGTCTTCGA GCGCAAGGAG 
ACCGAAGTCA CCGCGCTGCT GGCCGGTCTG GCGGCGGCCC TGGTGGTGCT GGCGGCCGGG 
CTCAGCGTGG CCTGGTTCGG ACGGGTCCTG TAG
 
Protein sequence
MNLTAIPLSF LWPSLLWALG LLPLLVLLYV WLLHRRKRQV VPYASLGLIK QAVGRGGSWR 
RHVPPILLAL ALASLLLALA RPVATLTLPL RDQTLLLAMD VSGSMRATDV EPNRLVASQV 
AAKNFVKDLP RHVRVGVVSF AGTAAVVQAP THSRDDVFAA IDRFQLQRGT AIGSGIVLSL 
ATLFPEAGID LSDITGERRM PKGIGESDKQ DDFKPVAPGS YGSAAVILLT DGQRTTGPDP 
MDAAKMAADR GVKVYTVGFG TTSGEIIGFE GWSMRVRLDE ATLKNIANLT QAEYFYAGSA 
TDLQKVYDTL SSRLVFERKE TEVTALLAGL AAALVVLAAG LSVAWFGRVL