| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2310 |
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| Symbol | |
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| ID | 6162162 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2508681 |
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| End bp | 2510528 |
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| Gene Length | 1848 bp |
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| Protein Length | 615 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641665079 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001791340 |
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| Protein GI | 171058991 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 75 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTCGT CCCATGCCGG CGCCACGCCG ACCCACAAGC CGGCCACGTC GGCCACGTCG
GCCACGCGCA GCCTGAAGAT CGCGCCCGGC CCGCTGGCCT GGAAGCAACT GGTCGCCTGG
CTGCAGGAAG ACGGCCTGAT CGGCGCCGCC GCCGCCGCCA CGCTGGCGCA GCGCCTGGCC
GGCAGCAGCA GCCTGCACCC GCTGGTGCGG CTGGCGGGCG CCGGCCTGCT CGATGCCCGC
AGCGGCGAGG CGCTCGACCT CGAGCTGCTG ACCCGCTGGC TGGCCCAGCG CGTGAGCCTG
CCCTACCTGC GCATCGACCC GCTCAAGGTC GACGTGGCGC GTGTCACCGA GGTGATGTCG
GCCGGGTATG CCGAGAAGCG CCGCATCCTG CCGGTGCAGG TGGGCTTGAG CGAAGTGACC
ATCGCCACCA GCGAGCCGCA CCTGCTCGAC TGGGTCAGCG AGATCGCCGC CCACACCCGC
AAGACCGTGC GGCTGGTGAT CGCCAACCCG AACGACATCG CCCGCTACAC CAGCGAGTTC
TACAACGTCG CGCGCTCGGT GCGTGCGGCG CAGAAAAGTG GCGAGACCGC CTCGGCGGTC
AACTTCGAGC AGCTGGTCGA GATGGGCAAG CACAAGCAGC TCGACGCCAA CGACCAGGGC
GTCGTGCAGC TGGTCGACTG GCTGTGGGGC TACGCCTTCG AGCAGCGCGC CAGCGACATC
CACCTCGAGC CGCGGCGCGA GCAGTGCGTC ATCCGGCTGC GCATCGACGG CGTGCTGCAC
ACCGTCTACA ACCTGCCGCA GACCGTGATG GCGGCAGTCA CCGCGCGCAT CAAGCTGCTC
GGCCGCATGG ACGTGATCGA GCGCCGGCGC GCCCAGGACG GCCGCATCAA GACCCGCAGC
CCCAAGGGCG ACGAGATCGA GATGCGGCTG TCGACCCTCC CGACGGCGTT TGGCGAGAAG
CTGGTGATGC GCATCTTCGA CCCCGAGACC GCGGTGCAGC CGGTCGAGGC GCTGGGTTTC
GGGCCGCACG ACGCCGCGCG CTGGCAGAGC CTGGTGGGGC AGGCGCACGG CATCATCCTC
GTCACCGGCC CGACCGGCAG CGGCAAGACC ACCACGCTCT ACGCCACGCT CAAGGGGCTG
GCGACCGACG AGGTCAACGT CTGCACCATC GAGGACCCGA TCGAGATGGT CGAGCCGGCC
TTCAACCAGA CCCAGGTGCA GCCTGCGCTC GATCTCGACT TCGCCACCGG CCTGCGCTCG
CTGATGCGCC AGGACCCCGA CATCATCATG ATCGGCGAGA TCCGCGACCT CGAGACCGCC
GAGATGGCGG TGCAGGCCGC GCTGACCGGC CACCTGGTCT TCAGCACCCT GCACACAAAC
GACTCGGCCA GCGCCGTCAC GCGACTGCTC GATCTGGGCG TGCCGGCCTA TCTGATCAAC
GCCACCGTGA TCGGCGTGCT GGCGCAGCGC CTGGTGCGCC AGCTGTGCGC CGCCTGCCGC
CAGGACGACC CGGCGGTGAC GCCCGAGTTG CTGCAGGCGG CGATGCCCGA TGTGCCGCTG
GCCGAATCGT TGGCAGAGAT GGGCGCGCTG TTCCGCCCGC AGCGCCCGGT CGGCTGCGAC
GCCTGCCGGC AGACCGGTTT CCGCGGCCGC CGCGGGCTGT TCGAGCTGCT GCTGCTGAGC
GCCGAGCTGC GCAGCGCCAT CGGCGAGCGC CCCGATCTGG CGGTGATCCG CCGCCAGGCC
TTGCGCGAAG GGCTGCAGCC GCTGCGGCTG GCGGGGCTGC GCCATGTTGC TGCCGGCCAC
ACCACGCTCG AAGAAGTGCT GCGCGCCACG CCGGCCTGGG AAAGCTGA
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| Protein sequence | MTSSHAGATP THKPATSATS ATRSLKIAPG PLAWKQLVAW LQEDGLIGAA AAATLAQRLA
GSSSLHPLVR LAGAGLLDAR SGEALDLELL TRWLAQRVSL PYLRIDPLKV DVARVTEVMS
AGYAEKRRIL PVQVGLSEVT IATSEPHLLD WVSEIAAHTR KTVRLVIANP NDIARYTSEF
YNVARSVRAA QKSGETASAV NFEQLVEMGK HKQLDANDQG VVQLVDWLWG YAFEQRASDI
HLEPRREQCV IRLRIDGVLH TVYNLPQTVM AAVTARIKLL GRMDVIERRR AQDGRIKTRS
PKGDEIEMRL STLPTAFGEK LVMRIFDPET AVQPVEALGF GPHDAARWQS LVGQAHGIIL
VTGPTGSGKT TTLYATLKGL ATDEVNVCTI EDPIEMVEPA FNQTQVQPAL DLDFATGLRS
LMRQDPDIIM IGEIRDLETA EMAVQAALTG HLVFSTLHTN DSASAVTRLL DLGVPAYLIN
ATVIGVLAQR LVRQLCAACR QDDPAVTPEL LQAAMPDVPL AESLAEMGAL FRPQRPVGCD
ACRQTGFRGR RGLFELLLLS AELRSAIGER PDLAVIRRQA LREGLQPLRL AGLRHVAAGH
TTLEEVLRAT PAWES
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