Gene Lcho_2308 details

Gene Information

• Locus tag: Lcho_2308
• ID: 6162160
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 2505723
• End bp: 2507636
• Gene Length: 1914 bp
• Protein Length: 637 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 641665078
• Product: protein of unknown function DUF637 hemagglutinin putative
• Protein accession: YP_001791339
• Protein GI: 171058990

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 67
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

TTGTCCGTAT CGGGCCACTT CCGTCTCTCT TCCTACCCCC GGGATTCAGA TTCCTATCGG 
GGCGACAACT ATTCTGACGC GGGGGGGATC CCGGCCGGCG ACTTCAAGAC GCAGATCCAG 
AGCCTGAGCC AGCAGCCGGG CATGGCCTAC CTGCAGACGC TGACCACGCG CAGCGACGTC 
AACTGGCAGC CCGTCAAGCT CGCCCACGAC CAGTGGCGCT ACGACCAGCA GGGCCTGACG 
CCGGCCGGGG CGGCATTGCT GAGCGTGGCG GTGGCCTGGG CCACCGGCGG CATGGGCGCC 
GGGCTTGTTG GCACCACCGG CACCACCACC AGCCTGATGG CCAACGCCGC CTTCTCCAGC 
CTGGCCAGCC AGGCCAGCAT CACGCTCATC AACAACCGCG GCGACATCGG CAAGACCTTG 
AAGGATCTGG GCCGCAGCGA TACCGTCAAG GCCACGCTGG CGGCGGCGCT CACCGCCGGG 
GCGCTGGACA AGATCGGCAC GCTGCCCGGC ATGGACACCC TGTCCAAGAG CACCGCGTTC 
ACCGACAAGC TCACCGCCAA CCTCGTCAAC GCCGGCGGCC GGGCGCTGAC CAACACCGCC 
ATCAATGGCG GCAGCCTGGA AGATGCCCTC AAGGGCGCCA TGATCGGCGG GCTGGTCGAT 
ACCGCGCACG GCGCAGTGGC CAGCGAGATC AAGGGGCTCG AAGCCGACTA CCTCACCCAC 
AAGCTCGCCC ACGCGCTGGC CGGCTGCGCG GCCGGGGCGG CGGCGCAGGG CACGTGCAAG 
GACGGGGCGA TCGGCGCGGC GGTGGGCGAG ATGGTGGCCG AACTGGTGCC CAAGCCGGCC 
GCCGGCGCCA GCAAGGCCAC GGTCGATGCC TACAACGCCA AGTCCAAGGC CTACAGCCAG 
CTCATCGCCG GCGGCGTGGC CGCCTACTCG GGTGGCAACG CCCAGTCGGC CATCACCACG 
GCCGAGATCG CGGTGCAGAA CAATTACCTG TCCAAGCCGC AGCTCGTCGC GCTGCAAGGT 
GAACTCAATA CCTGCCAGAC CAGCAACTGC ACCGAAACCC AGACCAACGC CATCCTCGAC 
AAGTACGCCA AGCTGTCGGC CACCAACGAC GCGGCGCTGG CCGCCTGCAC CACCCAGGTC 
TGCGTGGACA CGCACCGCAA GGCGCTGGTC GACGCCGCCG GCCTGAGCGC CAGCGTGATG 
TGGCAGGTCG GCAATGCCCG TGGCAACCCG CTGCTCATCG GCGAGCTGAT GGGCCGGCAG 
AACCAGGCCA GCAACCTGCA ATACCTGCAG GGCCGCGCCG AACGCATCGA ACAGGCCCGC 
AAACAGCTCG ACCAGTACGT CAGCACGAAC TGCCAGAGCC TGACCCAGGC GGCCTGCGGC 
ACCAAGCTGC AGCAGTCGCA GAGCTTCGCC AGCACACTGA CCGACATCTT CGTCGGCTTC 
ACCCCGGTGG GCATCGCCGT CGATATCAAG GATCTGCTGC AGGCCAAGAC GATGGGGGAC 
TACAGCCTGG CCGTGCTCGG CACGGTTCTG CCCGGGCTGG GGGATGGCGT CAAGGGGTTG 
GTGAAGGCCA ACAATGCCTT GCCGATACCT GCCAAGACCA TCGCTCAGAA TGGCTTGAAG 
ATCGAGTCGA ACACCAAACA CACACTTGGG CAGCTCGGCA ATAGATCAGA TGCAGGGATA 
GAGCCGAGGA ATTCTTTGGA GTTGTTCAAC AATTCAATCC CCGATCCGAC AAACCAGGGT 
GTTCGGTGGA GCGTCGATGT GGATGGTGGG GTACATCGAT TTTCTGGAAA AGGTGGTGAT 
GGAACATATC ACTGGAACGG AAGCACTTCG GATGACAGAA ATCCTATTCC ACAAAACAAA 
AAATATATTC CCCAAACAGT TTTGAGCTTG ACAAAGATGA AAAGGAAAGG CTAA 

 

Protein sequence

MSVSGHFRLS SYPRDSDSYR GDNYSDAGGI PAGDFKTQIQ SLSQQPGMAY LQTLTTRSDV 
NWQPVKLAHD QWRYDQQGLT PAGAALLSVA VAWATGGMGA GLVGTTGTTT SLMANAAFSS 
LASQASITLI NNRGDIGKTL KDLGRSDTVK ATLAAALTAG ALDKIGTLPG MDTLSKSTAF 
TDKLTANLVN AGGRALTNTA INGGSLEDAL KGAMIGGLVD TAHGAVASEI KGLEADYLTH 
KLAHALAGCA AGAAAQGTCK DGAIGAAVGE MVAELVPKPA AGASKATVDA YNAKSKAYSQ 
LIAGGVAAYS GGNAQSAITT AEIAVQNNYL SKPQLVALQG ELNTCQTSNC TETQTNAILD 
KYAKLSATND AALAACTTQV CVDTHRKALV DAAGLSASVM WQVGNARGNP LLIGELMGRQ 
NQASNLQYLQ GRAERIEQAR KQLDQYVSTN CQSLTQAACG TKLQQSQSFA STLTDIFVGF 
TPVGIAVDIK DLLQAKTMGD YSLAVLGTVL PGLGDGVKGL VKANNALPIP AKTIAQNGLK 
IESNTKHTLG QLGNRSDAGI EPRNSLELFN NSIPDPTNQG VRWSVDVDGG VHRFSGKGGD 
GTYHWNGSTS DDRNPIPQNK KYIPQTVLSL TKMKRKG