Gene Lcho_2209 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2209 
Symbol 
ID6163311 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp2409504 
End bp2410487 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content68% 
IMG OID641664978 
Productmonosaccharide-transporting ATPase 
Protein accessionYP_001791240 
Protein GI171058891 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.230129 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCGC TCGACACCTG GGAGCGCGTG CTGATCGCGC TGATCGTGGC GGTCTACTTC 
TGCTTCGGCA TCGGCATCGA GGGCTTCTTC TCGCCCTACG CGCTGGCCGA CAGCACCTAC 
AACTTCTCCG AGAAGGCGCT GATCGCACTC GCCATGGCGC TGCTGGTGGT CTCCGGCGAG 
ATCGACCTGT CGATCGCCGC GACCATGGCG CTGGCGTCGC TGGCGATGGG TTTTGCGATG 
CAGGCCGGCG CCGGCCTGCC GGTGATGCTG CTGGTGGCGA TCGCGGTCGG TGCGCTGTGC 
GGCGCCTTCA ACGGCTGGCT GGTCACGCGC TGGAAGCTGC CGTCGATCGT GGTCACCATC 
GGCACGCTGT CGCTCTATCG CGGCCTGGCG CAGGTGGTGC TGGGCGACCA GGCGATCACC 
GGCTATCCCG AGACGCTCAG CAACTGGGGC AACGGCAGCG TCGGTGACCT GATCGGTGTG 
CCGTGGCTGA TCGTGCCGAT CGAGTTCGCG GTGCTGCTGG TGATGGCGCT GGCCGTGGGC 
CTGCTGCTGC ACCGCACGAT CCACGGCCGG CGCATCTATG CGATCGGCGC CAACCCGATC 
GCCTCGCGCT TCTCGGGCAT CGCGGTCGAT CGCTATCGGC TCGGGCTGTT CATCTTTGCC 
GGAGTGATGG CGGCCCTCGC CGCGATCCTG CTGACCGGGC GCATCGGCAG CACGCGACCC 
AATCTGGCGA TGGGCTGGGA GCTCGACGCG GTGACGATCG TGATCCTCGG CGGCGTCGCC 
ATCGAGGGCG GGCGCGGCAG CATCGTCGGC GTGCTGCTGG CGGCCGTGCT GCTGGGCAGC 
TTCACGTTCG CGCTCGGCAT GTTGAACGTC TCGGGCATCG TGATGTCGAT GATCGTCGGC 
GCGCTGCTGA TCGTGGCGAT GGTGCTGCCA CGCTGGCTGC GGCTGCTGCG CCGCCCGAGT 
GCGGCGGCGC TCAAGCCGGC CTGA
 
Protein sequence
MKALDTWERV LIALIVAVYF CFGIGIEGFF SPYALADSTY NFSEKALIAL AMALLVVSGE 
IDLSIAATMA LASLAMGFAM QAGAGLPVML LVAIAVGALC GAFNGWLVTR WKLPSIVVTI 
GTLSLYRGLA QVVLGDQAIT GYPETLSNWG NGSVGDLIGV PWLIVPIEFA VLLVMALAVG 
LLLHRTIHGR RIYAIGANPI ASRFSGIAVD RYRLGLFIFA GVMAALAAIL LTGRIGSTRP 
NLAMGWELDA VTIVILGGVA IEGGRGSIVG VLLAAVLLGS FTFALGMLNV SGIVMSMIVG 
ALLIVAMVLP RWLRLLRRPS AAALKPA