Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2188 |
Symbol | |
ID | 6162434 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2390995 |
End bp | 2393196 |
Gene Length | 2202 bp |
Protein Length | 733 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641664956 |
Product | hypothetical protein |
Protein accession | YP_001791219 |
Protein GI | 171058870 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.47677 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGGAG ACCGCATCGA CCTGCGGCAC GCCCATGACG CCCTGCGCGC CATCGACCCC GGGTGCAGCC GCGACGACTG GCACAAGATC GGCCGCGCCG CCCTCGCTGC CGGCCTGAGC GTCGACGACC TGGTGGAGTG GAGCGCCAGC GCGCCGAACT TCAAGAGCGA GCGCGACGTG CGCGCGGCGT TCCGCACCGT CAACACCGCA GGCGGCACCG GCCCGGGCAC GCTGTGGAAA GCCGCCATCG ATGCCGGATG GAAACCGCCG CAGGACGGCA AGCCGCAGGA TCGGCCGCGC CAGCAGCCCA GGCCCCACCA GCAGGTGGCC GTGCGCCCCG GCAAGCCCCG GCAAGGCCTG TCGGCGCCTG AGCTGTGGGC GAGGTTCCTG CCGGCCGCCG ATGCCCACGG CTACATCGTC GCCAAGCAGG GCACCCCCGA GGGCCTGCGC GTGGTGCCAG AGGGCGATCC GCTGCGCATC GCTGGGCAAC CGATGGCTGG CGCCCTGGCC GTGCCGGTGT ACCCGCTGGG CAGTGACACC CCCGTGTCGA TCCAGTTCAT CCCGGCGCCT GGTGCCGGCA AGAAACTGAA CCTGCCCGGC GCCTCGATGG ATGGCGTGTT CATCGTCGGC GAGCTGCGGC CCGGCGAGCG CGTGCACCTG GTCGAAGGCA TCGGTCAGGC GTGGGCGTGC TGGAAGGCGA CCGGCGTCGC TGCCGTGGTG GCGTTCGGCT GGGGCCGCGT GGCCGGTGTG GCTGCCGAGC TGCGCCAGCG TGATGCATCG GCCCGGCTGG TGCTGGTGCC TGACGCGGGC AAGGAGGAAG ACGCTGCGGC AATCGCTGCC GAGGTGGGCG CCGCCGTGGT CACGATGCCG GCGGGCAGCC CGGCGAACTT CGACGCCAAC GACTACGCCC AGGCCGAAGG CTTCGACGCG CTGGAGGTGC TGCTGGGCAA TGCTCACGCC GCGCCAGAAC CGGCGCCACA CCCGCTCGCC CGCTTCATCG ACCTGGACGC AGAGCCGGCC GCACCGCGCT GGGTGATCCC CGGCTTCATC GGCCACGGCC TGGTCATCAT CGCGGGCGCC CACGGGGCCG GCAAGACGAC TGCGCTTCTG CCGCTGGCGC TGGTGGCGGC TGGCCTGCAT CCCCCTGGCG ATCCGCTGGC ACCGCTGCAC TGGCGCCGCG TGGTCTACGT CACCGAGGAC GTGGAGCAGG CTCGCCGCAT CCTGGCCGGG GTCCTGAGCC ACGCACAGTA CCGCCCGGCG CTCGACCTGG TGCGCGACCG CCTGCGCGTG GTCGAGGCCC GCCGCCTGCC GCCTGCCGAG GTGGTCGAAG TGGCTGGCGA CTACGCCCAC TTGCGCCGCG ATGTTGACGG CGTGGAGCTG CTGCCGCTGG TGGTGTTCGA CACCAAGTCC GCCGTGCTCG AGCTGGAAGA GGAGAACAGC AACAGCGAGG CCAGCGCCGC CGTCGCCATG CTCAAGCAAC GCTTCGCCGG CCTGCCGGTG TGGCTGGTCG GGCACGTTGC CAAGGCCAGC ATGAGCCGGT CCGATGTGGC GAACCTGTCG GCGCGCGGCG CGAGCGCATG GGAGGCGGAC GCGAATCAGG TGCTCTACCT GGCCACCGAT GGCGAGGTGC GGTACCTCAT GCGCGGCAAG ACCCGTTTCG AGGCTCGCTG GACCGAGCTG GAAATCAAGA CCTTCACGGC CATGACGACC GCCCGCAACG AGTTCGGCGG CACCGAGCAC GTCGTCTTGC GCTGGACGCA CCCGGCCCCG CCCGAGGTGC CACGCATCGA GGCCCGCGCA GAGGCCCAGG AACAGGCCCG CAAGGACGCC GATGCCGAGC TGCGTGTCGA GATCATGGAC GCGGTGCAAG CGGCCTGGCA GACGGGCAAC CCGCTGAACC GGGCAGGGGT CAAGGCGAAG ATCAGGCGCC GCGCCAGCGA GGTGACGGAC GCTATCGAGA ACCTGCTGTC GGAGATGTGG CTGTGGGAAG TGGGCGTGCC GGCGAAGGAG CGGGCGCACT CTTCGCGTGC CGCGTTCCTG GTCAAGCTGA CGACCGAGCA ACACGACGCT GTGCGTGCCG GCGAGCCCCT GCCGCCCGAG CTGCTGGTGA TCCCGGCAAC CTGGAAAAAA CAGGCGGCGC CACCCGTTCC CGAGTTGGTT GAGGAAAACG CGCCAGAGGT GGAAATTGAC CCGGCCGCCT GA
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Protein sequence | MTGDRIDLRH AHDALRAIDP GCSRDDWHKI GRAALAAGLS VDDLVEWSAS APNFKSERDV RAAFRTVNTA GGTGPGTLWK AAIDAGWKPP QDGKPQDRPR QQPRPHQQVA VRPGKPRQGL SAPELWARFL PAADAHGYIV AKQGTPEGLR VVPEGDPLRI AGQPMAGALA VPVYPLGSDT PVSIQFIPAP GAGKKLNLPG ASMDGVFIVG ELRPGERVHL VEGIGQAWAC WKATGVAAVV AFGWGRVAGV AAELRQRDAS ARLVLVPDAG KEEDAAAIAA EVGAAVVTMP AGSPANFDAN DYAQAEGFDA LEVLLGNAHA APEPAPHPLA RFIDLDAEPA APRWVIPGFI GHGLVIIAGA HGAGKTTALL PLALVAAGLH PPGDPLAPLH WRRVVYVTED VEQARRILAG VLSHAQYRPA LDLVRDRLRV VEARRLPPAE VVEVAGDYAH LRRDVDGVEL LPLVVFDTKS AVLELEEENS NSEASAAVAM LKQRFAGLPV WLVGHVAKAS MSRSDVANLS ARGASAWEAD ANQVLYLATD GEVRYLMRGK TRFEARWTEL EIKTFTAMTT ARNEFGGTEH VVLRWTHPAP PEVPRIEARA EAQEQARKDA DAELRVEIMD AVQAAWQTGN PLNRAGVKAK IRRRASEVTD AIENLLSEMW LWEVGVPAKE RAHSSRAAFL VKLTTEQHDA VRAGEPLPPE LLVIPATWKK QAAPPVPELV EENAPEVEID PAA
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