| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2188 |
|---|
| Symbol | |
|---|
| ID | 6162434 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 2390995 |
|---|
| End bp | 2393196 |
|---|
| Gene Length | 2202 bp |
|---|
| Protein Length | 733 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641664956 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001791219 |
|---|
| Protein GI | 171058870 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.47677 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGGAG ACCGCATCGA CCTGCGGCAC GCCCATGACG CCCTGCGCGC CATCGACCCC
GGGTGCAGCC GCGACGACTG GCACAAGATC GGCCGCGCCG CCCTCGCTGC CGGCCTGAGC
GTCGACGACC TGGTGGAGTG GAGCGCCAGC GCGCCGAACT TCAAGAGCGA GCGCGACGTG
CGCGCGGCGT TCCGCACCGT CAACACCGCA GGCGGCACCG GCCCGGGCAC GCTGTGGAAA
GCCGCCATCG ATGCCGGATG GAAACCGCCG CAGGACGGCA AGCCGCAGGA TCGGCCGCGC
CAGCAGCCCA GGCCCCACCA GCAGGTGGCC GTGCGCCCCG GCAAGCCCCG GCAAGGCCTG
TCGGCGCCTG AGCTGTGGGC GAGGTTCCTG CCGGCCGCCG ATGCCCACGG CTACATCGTC
GCCAAGCAGG GCACCCCCGA GGGCCTGCGC GTGGTGCCAG AGGGCGATCC GCTGCGCATC
GCTGGGCAAC CGATGGCTGG CGCCCTGGCC GTGCCGGTGT ACCCGCTGGG CAGTGACACC
CCCGTGTCGA TCCAGTTCAT CCCGGCGCCT GGTGCCGGCA AGAAACTGAA CCTGCCCGGC
GCCTCGATGG ATGGCGTGTT CATCGTCGGC GAGCTGCGGC CCGGCGAGCG CGTGCACCTG
GTCGAAGGCA TCGGTCAGGC GTGGGCGTGC TGGAAGGCGA CCGGCGTCGC TGCCGTGGTG
GCGTTCGGCT GGGGCCGCGT GGCCGGTGTG GCTGCCGAGC TGCGCCAGCG TGATGCATCG
GCCCGGCTGG TGCTGGTGCC TGACGCGGGC AAGGAGGAAG ACGCTGCGGC AATCGCTGCC
GAGGTGGGCG CCGCCGTGGT CACGATGCCG GCGGGCAGCC CGGCGAACTT CGACGCCAAC
GACTACGCCC AGGCCGAAGG CTTCGACGCG CTGGAGGTGC TGCTGGGCAA TGCTCACGCC
GCGCCAGAAC CGGCGCCACA CCCGCTCGCC CGCTTCATCG ACCTGGACGC AGAGCCGGCC
GCACCGCGCT GGGTGATCCC CGGCTTCATC GGCCACGGCC TGGTCATCAT CGCGGGCGCC
CACGGGGCCG GCAAGACGAC TGCGCTTCTG CCGCTGGCGC TGGTGGCGGC TGGCCTGCAT
CCCCCTGGCG ATCCGCTGGC ACCGCTGCAC TGGCGCCGCG TGGTCTACGT CACCGAGGAC
GTGGAGCAGG CTCGCCGCAT CCTGGCCGGG GTCCTGAGCC ACGCACAGTA CCGCCCGGCG
CTCGACCTGG TGCGCGACCG CCTGCGCGTG GTCGAGGCCC GCCGCCTGCC GCCTGCCGAG
GTGGTCGAAG TGGCTGGCGA CTACGCCCAC TTGCGCCGCG ATGTTGACGG CGTGGAGCTG
CTGCCGCTGG TGGTGTTCGA CACCAAGTCC GCCGTGCTCG AGCTGGAAGA GGAGAACAGC
AACAGCGAGG CCAGCGCCGC CGTCGCCATG CTCAAGCAAC GCTTCGCCGG CCTGCCGGTG
TGGCTGGTCG GGCACGTTGC CAAGGCCAGC ATGAGCCGGT CCGATGTGGC GAACCTGTCG
GCGCGCGGCG CGAGCGCATG GGAGGCGGAC GCGAATCAGG TGCTCTACCT GGCCACCGAT
GGCGAGGTGC GGTACCTCAT GCGCGGCAAG ACCCGTTTCG AGGCTCGCTG GACCGAGCTG
GAAATCAAGA CCTTCACGGC CATGACGACC GCCCGCAACG AGTTCGGCGG CACCGAGCAC
GTCGTCTTGC GCTGGACGCA CCCGGCCCCG CCCGAGGTGC CACGCATCGA GGCCCGCGCA
GAGGCCCAGG AACAGGCCCG CAAGGACGCC GATGCCGAGC TGCGTGTCGA GATCATGGAC
GCGGTGCAAG CGGCCTGGCA GACGGGCAAC CCGCTGAACC GGGCAGGGGT CAAGGCGAAG
ATCAGGCGCC GCGCCAGCGA GGTGACGGAC GCTATCGAGA ACCTGCTGTC GGAGATGTGG
CTGTGGGAAG TGGGCGTGCC GGCGAAGGAG CGGGCGCACT CTTCGCGTGC CGCGTTCCTG
GTCAAGCTGA CGACCGAGCA ACACGACGCT GTGCGTGCCG GCGAGCCCCT GCCGCCCGAG
CTGCTGGTGA TCCCGGCAAC CTGGAAAAAA CAGGCGGCGC CACCCGTTCC CGAGTTGGTT
GAGGAAAACG CGCCAGAGGT GGAAATTGAC CCGGCCGCCT GA
|
|---|
| Protein sequence | MTGDRIDLRH AHDALRAIDP GCSRDDWHKI GRAALAAGLS VDDLVEWSAS APNFKSERDV
RAAFRTVNTA GGTGPGTLWK AAIDAGWKPP QDGKPQDRPR QQPRPHQQVA VRPGKPRQGL
SAPELWARFL PAADAHGYIV AKQGTPEGLR VVPEGDPLRI AGQPMAGALA VPVYPLGSDT
PVSIQFIPAP GAGKKLNLPG ASMDGVFIVG ELRPGERVHL VEGIGQAWAC WKATGVAAVV
AFGWGRVAGV AAELRQRDAS ARLVLVPDAG KEEDAAAIAA EVGAAVVTMP AGSPANFDAN
DYAQAEGFDA LEVLLGNAHA APEPAPHPLA RFIDLDAEPA APRWVIPGFI GHGLVIIAGA
HGAGKTTALL PLALVAAGLH PPGDPLAPLH WRRVVYVTED VEQARRILAG VLSHAQYRPA
LDLVRDRLRV VEARRLPPAE VVEVAGDYAH LRRDVDGVEL LPLVVFDTKS AVLELEEENS
NSEASAAVAM LKQRFAGLPV WLVGHVAKAS MSRSDVANLS ARGASAWEAD ANQVLYLATD
GEVRYLMRGK TRFEARWTEL EIKTFTAMTT ARNEFGGTEH VVLRWTHPAP PEVPRIEARA
EAQEQARKDA DAELRVEIMD AVQAAWQTGN PLNRAGVKAK IRRRASEVTD AIENLLSEMW
LWEVGVPAKE RAHSSRAAFL VKLTTEQHDA VRAGEPLPPE LLVIPATWKK QAAPPVPELV
EENAPEVEID PAA
|
|---|
| |