Gene Lcho_2130 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2130 
Symbol 
ID6161623 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp2331561 
End bp2332292 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content67% 
IMG OID641664899 
Producthypothetical protein 
Protein accessionYP_001791162 
Protein GI171058813 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.00274395 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCAACCC AGAAAACCGC CCGTCCGACG ACCCCGTCAC TGGCCCCTGC GATCAAGAAG 
ACCGCCGCAC CCGCCGCGAA GAAGGCCGCC GCCTCGGGCG CGACGGACGC GGCGAACCTG 
GCCAGCGCCG CCCGCGTCAC GCAGTCGGCC GGCCAGCTGG CCGCGCGGGC TGCCAGCCGC 
GCGCTGCCGG CCGCGCCCAG CCTGACCTCC GAACTCAACA ACATCGACTT CCAGAAGATG 
ATCGGCGGCC CGCTGCAGGC GGCCGTCGAC GCGCAGGTGA AATCGTCGCT GGCCACGGTC 
GAGTTCATCA ACGCGGTGGG GTTCACGACC GCCCCCCAGA CCCAGAAGCG CGAGCTGGTG 
ATGGTCGACT TCTCGCACAC CAAGAAGGAC GTCGACGACA CGGGCGCCGC CAAGGTCACC 
GACGTCAACG TCAAGGTGCC GCTGCTGGCG ATGCTGCAGA TCCCCAGCCT GCGCATCGAG 
CACGTCATCA TCGACTTCAA CGTCAAGCTC AACTCGGTGC AGACCAGCAG CGTGTCCGAC 
AAGCTGGGCA TCGACGCCAG TGCCAGTGGC GGCTGGGGGC CGGTGAACTT CAAGGTCTCG 
GCGTCATATC AGCGCCAGTC GAGCAGCGGG GTCGAGGTGA AGAAGGAGTA CGCGCTCAAC 
GTCAACGTCA AGGCGGTGCA GGACGAGATC CCGGCCGGGC TCGAGAAGAT CCTCGGCATG 
CTGTCCGCCT GA
 
Protein sequence
MATQKTARPT TPSLAPAIKK TAAPAAKKAA ASGATDAANL ASAARVTQSA GQLAARAASR 
ALPAAPSLTS ELNNIDFQKM IGGPLQAAVD AQVKSSLATV EFINAVGFTT APQTQKRELV 
MVDFSHTKKD VDDTGAAKVT DVNVKVPLLA MLQIPSLRIE HVIIDFNVKL NSVQTSSVSD 
KLGIDASASG GWGPVNFKVS ASYQRQSSSG VEVKKEYALN VNVKAVQDEI PAGLEKILGM 
LSA