Gene Lcho_2120 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2120 
Symbol 
ID6162040 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp2318223 
End bp2318927 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content70% 
IMG OID641664889 
ProductTetR family transcriptional regulator 
Protein accessionYP_001791152 
Protein GI171058803 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.249669 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGAACG ACAGCCCCGC AACCACCACC CGCCGCCAGC CCGCCAGCGC CAAGAGCGAG 
CAGCGCATCC GCGACATCCT GCGGATCGCT CGCGAGGTGT TCGCCGAGAA GGGCTACGAA 
CGCGCCACCA CCACCGAGAT CGCGCAACGC CTGGGTATCA GCGAGGCGAC CGTGTTCACC 
TACTTCCGCG GCAAGCGCGA GCTGTGCGTG CGTGTCATCA GCGACTGGTA CGACGAGATC 
ATCCAGGCCA TGGAGACCGG CCTGCGGCGC GATCAGCCGG TGCGCGCGCA GCTGCAGTTC 
CTGATCCGCA CGCACCTGCA TCTGTTCCTG ATCCAGGGCA CCGGGCTGTG CGCGCTGGTG 
CTGTCGGAGG GGCGATCGAA GGGTCAGGAG CTGGGCGAGA GCTTCCTGCC GCTGCAGCGC 
CGCTACACCG CGCCGCTGAT GGACCTGCTG GCGCGCGGCC AGGCCAGCGG CGAGATCCGC 
CAGGACGTGC CGCTGCGCCT GATGCGCGCG ATGGTGCTCG GCCCGATGGA GCACCTGCTG 
TGGGAGGTGG TGGCGCAGGA CAAGCCGACC GACATCGACG CGGTCTCGCA CGACCTGGTG 
GCGCTGCTGT GGTCGGCCCT GCAGGCACCC GATGCCGAAC GGGCCGCGCT GCGCCGCCTG 
CAGCGCGAGG TGGCCGATGC GCTGCAGCGC GCCGGTGGCG CCTGA
 
Protein sequence
MQNDSPATTT RRQPASAKSE QRIRDILRIA REVFAEKGYE RATTTEIAQR LGISEATVFT 
YFRGKRELCV RVISDWYDEI IQAMETGLRR DQPVRAQLQF LIRTHLHLFL IQGTGLCALV 
LSEGRSKGQE LGESFLPLQR RYTAPLMDLL ARGQASGEIR QDVPLRLMRA MVLGPMEHLL 
WEVVAQDKPT DIDAVSHDLV ALLWSALQAP DAERAALRRL QREVADALQR AGGA