| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2095 |
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| Symbol | |
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| ID | 6160873 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2288881 |
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| End bp | 2290779 |
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| Gene Length | 1899 bp |
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| Protein Length | 632 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641664864 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001791127 |
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| Protein GI | 171058778 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCTGA TACGACAAGT CTGGCTGTTA GTTCTGGGCA TCATCATTTT TGCCCTCGTT
GGCAGCATCG CCTCGTCGAT CTGGACCGCG CGCGGTTATC TCCAGACGCA ATTGGCCTTG
AAAAACAGCG ACAACGCGCA GTCGCTCGCA TTGACCTTGT CGCAACAGGG TGGGGATATC
GCCTTGATCG AACTGGCGAT CTCGGCGCAG TTCGACATCG GACATTACCG GTCGATCCGG
TTGAAGGACG AACGCGGCGC GGTGCTGATC GGCCGTGAGG CTGCCCCCGT CGAGGCCGGC
GCGCCGCGCT GGTTCACGCG CCTGATCGAG ATCGAGTCGG TCCCCGGCGT GGCACAGGTG
TCGGCGGGCT GGGCCGCGCT GGGCAGCCTC GAGGTGATCA GCCAGCCAAG CTTCGCCTAT
GCCGAACTGT GGACGGGTGC CTGGACCAAC ACGCTCTGGA TGTTGATGGT CGGCGCGGTT
GCCGCGCTGG TCGCGCATCT GGCTGTGAAC CGACTGCGTC GACCGCTCGA CGAGGCGGTT
GCGCAGGCAC AGGCGCTGAG TCAGCGTCGT TACATGACCA TCGTCGAGCC GGCGACGCCC
GAGTTGCGCG ATGTGTCGCG AGCGATGAAT CAGATGGTCG ATCGCGTGCG GCTGCAATTC
AACGAGCAGG CGGCGCAGGT CGACGAGTTG CGCCAGCGCG CCAACGGCGA TGCGCTGACC
GGTGTGTCGC ACCGGGCGCA TTTCATGTCT TGCCTGCATG CGCAGTTGAC GCACGAGGAC
TTGCCGGTTG ACGGGCAACT GATCCTGATT CGCGTCCTGG GACTGGCCGA ACTGAATCTG
AAACAGGGGC ATCTTGCGAC CGACGCGATG CTGCAATCGC TGGCGCGCAG CCTCGAGGAG
CCCGCCGGCG ACAGTGTGCC GCGCGTGGTG GGGCGGCTCA ACGGCAGCGA TTTTGCGATC
CTGTTCGGCC ATGACGGCGC GTCCAGCGAT GCCGCGGGCA TCCTGATGGA CAAGGTGCGC
ACCGGTCTGG CGGCCTATCC GGGCGCGGCT TCGGTGATGT CGGCCGTGCG ATTGCAGCAG
GCCGACACCG TCGCCGCCCT GATGTCGCGA GCCGATGCCG GCCTGGCGTG TGCCGAGGCG
CGGGGCGACT TCTCGATCGA ACTCGTCGAG CAGGCCGACC TGCTGGCGCA AGCCGGTGGC
GAGGTCGTGT GGCGCCAGTC CATTCGCGAG GCGCTCCGGC ACGGACGGGT GCGCTTGGGG
CATTTCGCGG TCGTGGATCG CAGCGGCCGG CGCATCCACA CCGAAAGCCC CCTGCGACTG
CAGATGAAGG CGGGCGACGA CTACCAGGTG GCCGCCACCT GGCTGCCGCA TGCCATGCGC
ACCGGCCTGA CGTCGGACAT CGACGCCTGC GCCATCGACC TGGCGATGCG CGCCATCGCG
CTGGATCAGA AGCCGCGCTG CATCAACCTG TCGCCGCGTT CGCTGTGCGA CCCGATGTTC
CTGTCTCGCG TCGTGGCTCG CCTGAAGGAC GACACGCACG CCACGCGGCT GCTGTGGGTG
GAGGTCGATG CCTCGGTCCT GGCGCGCCAT GCCAGCGAAC TGACCGAACT GTGCAGCCGC
TTGCGGCCGA TGGGCGTGCA CGTCGGCATC GAGCATGTCG GTGAACGCAT GGCCACCAGC
CATGCGGTTT TCGAGGCCGG CCTCGATTAC ATCAAGCTCT CCCAGACGCT CAGCCAAGAC
ATTGCCTCGC ATCCGGCGCG CCAGTCGCTG CTCAGGGGCA TCGTTTCGGT TCTGCACGGC
TTGGGTGTTG CGGTGTATGC CGAGGGGCTG CGGAACGCAG CCGATGTGAC GGGTTGCTGG
GATTGCGGCG TCGATGGCGT GACGGGTCCT GCGGTCTGA
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| Protein sequence | MSLIRQVWLL VLGIIIFALV GSIASSIWTA RGYLQTQLAL KNSDNAQSLA LTLSQQGGDI
ALIELAISAQ FDIGHYRSIR LKDERGAVLI GREAAPVEAG APRWFTRLIE IESVPGVAQV
SAGWAALGSL EVISQPSFAY AELWTGAWTN TLWMLMVGAV AALVAHLAVN RLRRPLDEAV
AQAQALSQRR YMTIVEPATP ELRDVSRAMN QMVDRVRLQF NEQAAQVDEL RQRANGDALT
GVSHRAHFMS CLHAQLTHED LPVDGQLILI RVLGLAELNL KQGHLATDAM LQSLARSLEE
PAGDSVPRVV GRLNGSDFAI LFGHDGASSD AAGILMDKVR TGLAAYPGAA SVMSAVRLQQ
ADTVAALMSR ADAGLACAEA RGDFSIELVE QADLLAQAGG EVVWRQSIRE ALRHGRVRLG
HFAVVDRSGR RIHTESPLRL QMKAGDDYQV AATWLPHAMR TGLTSDIDAC AIDLAMRAIA
LDQKPRCINL SPRSLCDPMF LSRVVARLKD DTHATRLLWV EVDASVLARH ASELTELCSR
LRPMGVHVGI EHVGERMATS HAVFEAGLDY IKLSQTLSQD IASHPARQSL LRGIVSVLHG
LGVAVYAEGL RNAADVTGCW DCGVDGVTGP AV
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