Gene Lcho_2060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2060 
Symbol 
ID6160993 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp2238617 
End bp2239162 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content74% 
IMG OID641664829 
Productputative transmembrane protein 
Protein accessionYP_001791092 
Protein GI171058743 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.00459983 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCACCG ACCGTCCTCT CGCCAGTACC GTCCCGAGCG CCCCTGTCCG GGCACGCGCG 
CTGCACGCCG CTTGGTTGCT GTGCGCGCTT TGCGGCGTCC TGATCAGCCC GCCCAGCCAG 
GCGCAATGGA AGTGGCGCAA CGCCCAGGGC CAGGTGCAGT ACAGCGACCG ACCGCCGCCT 
CAGAACGTGC CGCCGCGCGA CATCCTGCAG CGCCCGGCCG CAGCACGGCC ACCGGTCGGC 
ACCGCGCCCG CAGCAGCGGC TGCGGCCGGC CCGGCCAGTG CCGCGTCAGG CCCGCGAACC 
GTCGATCCCG AGCTGAATGC GCGCCGTCGC GACGCCGAGG CAGCCGAGCG CAAGGCGGCC 
GACGAGCAGC TCGCCCGCGA GCGCGCCGAG AGCTGCGCGC GGGCCCGCGA CTATCTGCGC 
ACGCTCGAAA CCGGCCTGCC GATCGCCCGC GTCAACGCGC AGGGTGAGCG CACCACGCTC 
GGCGACAACG AACGCCGCGC CGAGTTGAAC CGCGCACGCG AAGTGATCGC AGCGGACTGC 
CGTTGA
 
Protein sequence
MSTDRPLAST VPSAPVRARA LHAAWLLCAL CGVLISPPSQ AQWKWRNAQG QVQYSDRPPP 
QNVPPRDILQ RPAAARPPVG TAPAAAAAAG PASAASGPRT VDPELNARRR DAEAAERKAA 
DEQLARERAE SCARARDYLR TLETGLPIAR VNAQGERTTL GDNERRAELN RAREVIAADC 
R