| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2056 |
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| Symbol | |
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| ID | 6160592 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2236017 |
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| End bp | 2237216 |
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| Gene Length | 1200 bp |
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| Protein Length | 399 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641664825 |
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| Product | Cys/Met metabolism pyridoxal-phosphate-dependent protein |
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| Protein accession | YP_001791088 |
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| Protein GI | 171058739 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
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| TIGRFAM ID | [TIGR01324] cystathionine beta-lyase, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.00694451 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCGACC CCCAGCTCGC CACCGCGCTG ATCCATCACC CGTACCGGGC GCCGGCCGAG
TGGGACGCGA TTCCCACGGG CGTGTTCAAG GCCTCGACGG TGTTCTTCCC CAACGTCGCG
GCCATGCGCG AGCGGCGCTG GATCGACAAG AGCGCCTACA CCTACGGCCT CAAGGGCACA
CCGACCACCT TCACGCTCGA AGCCCGGCTG GCCACGCTCG AAGGCGCCGA GCACCTGATG
CTGGTGCCCA GCGGGCTGGC GGCGATCATG CTGATCGACC TGGCGGTGCT GAAGACCGGC
GACGCTGTGC TGCTGCCCGA CAACGCCTAC GGCCCCAGCA TGAGCCTGGC CCAGCACGAG
TTGCGCCACT GGGGCATCAC GCACCAGGTC TACGACCCGA TGGACGTGGC CAGCCTGAGC
GCGGCGCTGA CGCCCGCCAC CCGGCTGGTC TGGCTGGAGG CGGCGGGCTC GGTGACGATG
GAGTTCCCGG ACCTGCGCGC GTTGATCCGT TGCGTGCGCC GCGAGGCACC GCAGGCGCTG
ATCGCGATCG ACCACACCTG GGGCGCGGGC CTGGCGTTCA AGCCGTTTGC GCTCGGCGCA
GGCGACGAGG ATCTGGCGGT CGACTTCACG GCCCACGCGC TGACCAAATA CCCGTCCGGC
GGCGGCGACG TGCTGCTGGG CTCGGTGGGC TGCCGCGACC GGCGCCTGCA CGATCAGCTG
GCCTGGTGCC ACGCCCGGCT CGGCCTCGGC GTGGGGGTCG ACGACGTGGC CGCGGTGCTG
CGCGGCCTGC CGACGCTGCC GTTGCGCTAC GCCGCGCAGG ACCAGGCTGC GCGCCGCATC
GCCAGCTGGG CGCAGGGCCG TGCCGAGGTG GCGCGGGTGC TGCACCCTGC CCTGCCGGAT
TCGCCCGGCC ACGCGCACTG GGCCGCGCTG TGCACGCAGG CCGCGGGCAT CTTCTCGATC
GAGATGCAGC CGGGCTACAG CCAGGCGCAG GTCGACGCCT TCGTCGACGC GCTCAAGCTG
TTTCGCATCG GCTGGTCATG GGCCGGACCG GTGAGCCTGG TGGTGCCGTA CGAGGTATCC
ACGATGCGCC GCCTGCCCAC ACCCTACCGC GGCGCGCTGG TGCGGCTGTG CATCGGGCTC
GAAGACGTCG ACGACCTGAT CGCCGACCTC GACCAGGCGC TCGCCAGGCT GTCGGACTGA
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| Protein sequence | MTDPQLATAL IHHPYRAPAE WDAIPTGVFK ASTVFFPNVA AMRERRWIDK SAYTYGLKGT
PTTFTLEARL ATLEGAEHLM LVPSGLAAIM LIDLAVLKTG DAVLLPDNAY GPSMSLAQHE
LRHWGITHQV YDPMDVASLS AALTPATRLV WLEAAGSVTM EFPDLRALIR CVRREAPQAL
IAIDHTWGAG LAFKPFALGA GDEDLAVDFT AHALTKYPSG GGDVLLGSVG CRDRRLHDQL
AWCHARLGLG VGVDDVAAVL RGLPTLPLRY AAQDQAARRI ASWAQGRAEV ARVLHPALPD
SPGHAHWAAL CTQAAGIFSI EMQPGYSQAQ VDAFVDALKL FRIGWSWAGP VSLVVPYEVS
TMRRLPTPYR GALVRLCIGL EDVDDLIADL DQALARLSD
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