Gene Lcho_2032 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2032 
Symbol 
ID6161562 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp2206935 
End bp2207918 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content65% 
IMG OID641664801 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001791064 
Protein GI171058715 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.150977 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTTCCT ACATCCTGCG TCGCCTCGGC CATGGTTTGC TGGTGCTGCT GGGCGTCAAC 
CTGCTGACGT TCTTCCTGTT CTTCAGCGTC AACACGCCCG ACGACATGGC GCGGCTGAAC 
ATCGGCGGCA AGCGCATCAC GCCCGAGCAG ATCCAGAAGT GGAAAACCGA GCGCGGCTAC 
GACAAGCCGC TGTACTGGAA CGATGCGAAG CAGGGCGGCG AGCAGCTCAC CGAGACGATC 
TTCTGGGAGC GCTCGGTGTC GCTGTTCACG CTGCAGTTCG GCCGCGCCGA CGCCGAGAGC 
GCCGGCGACA TCGGCACGCA GGTCAAGAGC CGGATGTGGG TCAGCCTGCA ACTGGCCTTG 
CCGCTGTTCG TGCTGCAGTT GATCGCGAGC ACGCTGTTCG CGCTGGTGCT GGTGTTCTTC 
CGCGGCAGCC GGATCGATTT CTGGGGCGTC GTGCTGTGCG TGGCGATGCT GTCGATCTCG 
AGCCTGTTCT ACATCGTGGT CGGCCAGTTT TTGTTCTCGC GCGTGCTGCG GCTCGCGCCG 
ATCTCGGGTT ATGCCGAGGG TTGGGCGGCC TGGCGTTTCA TGCTGCTGCC GATCGGGCTG 
TCGCTGCTGG CGCGGCTGGG CACCGAGGCG CGCCTGTACC GCGCGATGCT GCTCGAAGAA 
ATGGGCAAGG ACTACGTGCG CACCGCGCGC GCCAAGGGCC TGTCGGAGGC GGTGGTTCTC 
GGCCGCCACG TGCTGCGCAA CGCGCTGCTG CCGATCCTGA CCAGCGCCGG CAGTTATCTG 
CCCTACGTGT TCCTCGGCAG CCTGGTGTTC GAGAGCTTCT TCGGCCTGCC GGGGCTGGGC 
GCCTACGTGA TCGAGGCCAT CAGCGGCCAG GATTTCGCGA TCGTGCGCAC GATGGTGTTC 
CTGGGCTCGC TGCTCTACAT CGCCTCGTTC ATCGCGGTGG ACATCGCCTA CAGCTTGGCC 
GATCCGCGGG TGAGGCTCGC ATGA
 
Protein sequence
MTSYILRRLG HGLLVLLGVN LLTFFLFFSV NTPDDMARLN IGGKRITPEQ IQKWKTERGY 
DKPLYWNDAK QGGEQLTETI FWERSVSLFT LQFGRADAES AGDIGTQVKS RMWVSLQLAL 
PLFVLQLIAS TLFALVLVFF RGSRIDFWGV VLCVAMLSIS SLFYIVVGQF LFSRVLRLAP 
ISGYAEGWAA WRFMLLPIGL SLLARLGTEA RLYRAMLLEE MGKDYVRTAR AKGLSEAVVL 
GRHVLRNALL PILTSAGSYL PYVFLGSLVF ESFFGLPGLG AYVIEAISGQ DFAIVRTMVF 
LGSLLYIASF IAVDIAYSLA DPRVRLA