| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2030 |
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| Symbol | |
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| ID | 6161560 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2203456 |
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| End bp | 2205384 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641664799 |
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| Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
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| Protein accession | YP_001791062 |
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| Protein GI | 171058713 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
[COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
[TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.622365 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCGC CGGGCGTGCC AGACCCGCGG GGCGAGGCCC AGGCGCTGCG GCTCGATCAG
CTGCAGGTGG CGCTCGATGT CGATCAGGCC GACGCCGCCT TGCTGCGCGC AGTTGACGGC
CTGTCGCTGG CGATCCGCCG CGGCGAGACC TTCGCGCTGG TCGGCGAATC GGGCTGCGGC
AAGAGCATGA CCGCGCTTGC GCTGATGCGC GTGCTGCCGC ACAACGGTTT TGTCGAATCG
GGCTCGGTGC GCCTGGGCCG CACCGAACTG CTCGACCTGC CCGAAGCGCA GATGCGCCGG
GTGCGTGGCG GGCGCATCGG CATGATCTTC CAGGAGCCGT CGACCAGCCT GAACCCGGTG
ATGACGGTGG GCGCGCAGCT GCGCGAGGCG ATCGAGGCCC ACACCGCACT GCGCGGCGCC
GCCGCCCGTG CACGTGCGGT CGAGTGGCTG GCGCGCGTGG GCCTGCCCGA GCCGGCGCGC
TGTTTCGACG ACTACCCGTT TCGCCTGTCG GGCGGCCAGC AGCAGCGCGT GATGATCGCC
ATCGCGCTGG CCGCCGAGCC CGATTTCCTG ATCGCCGACG AGCCGACCAC GGCGCTCGAC
GTGACGATCC AGGCGCAGAT CCTCGACCTG CTGCGCGACC TGCAGCGCGA GCACCAGATG
GGCCTGTTGC TGATCACGCA TGACCTGGCG GTGGTGGCCG GCATGGCGCA GCAGGTGGCG
CTGATGTATG CCGGCCAGAT CGTCGAGGTC GGCAGCGCCG AGGCATTTTT TGCCGCGCCG
CGCCACCCCT ATGCGCAACT GCTGTTGCAG GCGCTGCCCG ACGGCGCACG GCGCGGCCGG
CCGCTGGCGG CGATCGGCGG CGCGGTGCCG TCGCTTGCGC AGCAATTCAA CGCCTGCCGC
TTCGCGCCGC GCTGCCCGCA TGCGCAGGAC GTCTGCCTGA ACGCCGAGCC GACGTGGGTG
GAGATGCCGC CAGGCCACGG GCTGCGTTGC GCGCGCGCCG GCGATGCGGC GCTGGATCAC
GCAGCGCATG GCAGATCGCC AGCACCGTCG ATCACGCCGT CGACAGGTCG TCCGATGACG
CCACCCGATG CCCGCCTCAC ATCCGGCGCC ACGCCGGTGC CTTTGCTGGC GGTGGAGCAG
TTGCGTGTCA CGTTCTCGCG CGCGAGCGGA TTCTGGTGGC GCTCGCAGTC TGGCACCGCC
GCCGTCGACG GCATCAGCCT GCAACTGGCG CGCGGCCGCA CGCTGGCGCT GGTGGGCGAA
TCGGGCAGCG GCAAGACGAC CACCGGCAAG GCGATCGCGC AGTTGCTGCG GCGCCAGGCC
ACGTGCACCG GCCGCGCGCT GCTCGACGGC CGCGATCTGT TCACCTTGCA AGGCAGCGAA
CTGCGCGCCG CGCGGCGGGA GGTGCAGCTG ATCTTTCAGG ACCCGTACGC CTCGCTGAAC
CCGCGCATGC GGGTGGCCGA CATCCTGGCC GAGGGCCTGA TCGAGTTGCG GCCGGAGTTG
AGCCAACACA CGCGCAAACG CCGCGTCGAC GACCTGGCCG AGCAGGTCGG CCTGCCGTCA
CGCGCCTTGC AGGCTTATCC GCACGAGTTT TCGGGCGGCC AGCGCCAGCG CATCGCGATT
GCGCGCGCAC TGGCGGTCGA GCCGCGGCTG CTGATCTGCG ACGAGCCGAC CTCGGCGCTC
GACGTGTCGG TGCAGGCACA GATCCTCAAC CTGCTGCGCC AGTTGCAGCA CGACACCGGC
GTGGCGCTGC TGTTCATCAC CCACCACCTC GGCGTGGTCG AGTACCTGGC CGACGAGGTG
GCGGTGATGC AGGGTGGGCG CATCGTCGAG GTCGGCACGG TCGACCAGGT GCTGGGCGCG
CCGCGCAGGG ACTACACCCG CGCGCTGCTG GCCGCGGTGC CACGGCTGGC GACCCGAACC
GGGCCCTGA
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| Protein sequence | MSAPGVPDPR GEAQALRLDQ LQVALDVDQA DAALLRAVDG LSLAIRRGET FALVGESGCG
KSMTALALMR VLPHNGFVES GSVRLGRTEL LDLPEAQMRR VRGGRIGMIF QEPSTSLNPV
MTVGAQLREA IEAHTALRGA AARARAVEWL ARVGLPEPAR CFDDYPFRLS GGQQQRVMIA
IALAAEPDFL IADEPTTALD VTIQAQILDL LRDLQREHQM GLLLITHDLA VVAGMAQQVA
LMYAGQIVEV GSAEAFFAAP RHPYAQLLLQ ALPDGARRGR PLAAIGGAVP SLAQQFNACR
FAPRCPHAQD VCLNAEPTWV EMPPGHGLRC ARAGDAALDH AAHGRSPAPS ITPSTGRPMT
PPDARLTSGA TPVPLLAVEQ LRVTFSRASG FWWRSQSGTA AVDGISLQLA RGRTLALVGE
SGSGKTTTGK AIAQLLRRQA TCTGRALLDG RDLFTLQGSE LRAARREVQL IFQDPYASLN
PRMRVADILA EGLIELRPEL SQHTRKRRVD DLAEQVGLPS RALQAYPHEF SGGQRQRIAI
ARALAVEPRL LICDEPTSAL DVSVQAQILN LLRQLQHDTG VALLFITHHL GVVEYLADEV
AVMQGGRIVE VGTVDQVLGA PRRDYTRALL AAVPRLATRT GP
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